Search results for the GEO ID: GSE17184  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM429426 | GPL1261 |
|
hepatic gene expression at "0 hr", rep1
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: untreated
time point: 0 hr
replicate: 1
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "0 hr" (rep1)
|
| Sample_geo_accession | GSM429426
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429426/suppl/GSM429426.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429426/suppl/GSM429426.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429428 | GPL1261 |
|
hepatic gene expression at "0 hr", rep2
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: untreated
time point: 0 hr
replicate: 2
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "0 hr" (rep2)
|
| Sample_geo_accession | GSM429428
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429428/suppl/GSM429428.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429428/suppl/GSM429428.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429430 | GPL1261 |
|
hepatic gene expression at "0 hr", rep3
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: untreated
time point: 0 hr
replicate: 3
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "0 hr" (rep3)
|
| Sample_geo_accession | GSM429430
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 17 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429430/suppl/GSM429430.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429430/suppl/GSM429430.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429856 | GPL1261 |
|
hepatic gene expression at "1 hr", rep1
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 1 hr
replicate: 1
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "1 hr" (rep1)
|
| Sample_geo_accession | GSM429856
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429856/suppl/GSM429856.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429856/suppl/GSM429856.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429857 | GPL1261 |
|
hepatic gene expression at "1 hr", rep2
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 1 hr
replicate: 2
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "1 hr" (rep2)
|
| Sample_geo_accession | GSM429857
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429857/suppl/GSM429857.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429857/suppl/GSM429857.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429858 | GPL1261 |
|
hepatic gene expression at "1 hr", rep3
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 1 hr
replicate: 3
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "1hr" (rep3)
|
| Sample_geo_accession | GSM429858
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429858/suppl/GSM429858.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429858/suppl/GSM429858.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429859 | GPL1261 |
|
hepatic gene expression at "3 hr" (rep1)
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 3 hr
replicate: 1
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "3 hr" (rep1)
|
| Sample_geo_accession | GSM429859
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429859/suppl/GSM429859.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429859/suppl/GSM429859.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429860 | GPL1261 |
|
hepatic gene expression at "3 hr" (rep3)
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 3 hr
replicate: 3
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "3 hr" (rep3)
|
| Sample_geo_accession | GSM429860
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429860/suppl/GSM429860.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429860/suppl/GSM429860.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429861 | GPL1261 |
|
hepatic gene expression at "6 hr" (rep1)
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 6 hr
replicate: 1
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "6 hr" (rep1)
|
| Sample_geo_accession | GSM429861
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429861/suppl/GSM429861.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429861/suppl/GSM429861.chp.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429862 | GPL1261 |
|
hepatic gene expression at "3 hr" (rep2)
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 3 hr
replicate: 2
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "3hr" (rep2)
|
| Sample_geo_accession | GSM429862
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429862/suppl/GSM429862.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429862/suppl/GSM429862.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429863 | GPL1261 |
|
hepatic gene expression at "6 hr" (rep2)
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 6 hr
replicate: 2
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "6hr" (rep2)
|
| Sample_geo_accession | GSM429863
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429863/suppl/GSM429863.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429863/suppl/GSM429863.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
|
GSM429864 | GPL1261 |
|
hepatic gene expression at "6 hr" (rep3)
|
8- to 10-week-old male balb/c mice. tissue: whole liver
|
agent: ConA
time point: 6 hr
replicate: 3
age: 8- to 10-week-old
gender: male
strain: Balb/c
tissue: whole liver
|
a time series of ConA injections was administered and 20 mg/kg ConA was injected through the mouse caudal vein at one of 4 time points (0 hr, 1 hr, 3 hr, 6 hr),here is hepatic gene expression at "6hr" (rep3)
|
| Sample_geo_accession | GSM429864
| | Sample_status | Public on Jul 21 2009
| | Sample_submission_date | Jul 18 2009
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Liver samples from each mouse were ground into a fine powder in a mortar cooled by liquid nitrogen, and 100 mg was added to 1 ml prechilled Trizol reagent (Invitrogen, Carlsbad, CA). Total RNA extractions were performed according to the manufacturer’s directions, and the RNA was further puri-fied by passage through RNeasy mini-columns (QIAGEN, Valencia, CA) according to the manufacturer’s protocols for RNA clean-up. Final RNA preparations were resuspended in RNase-free water and stored at –80°C. The RNA samples were quantified spectrophotometrically, and purity and integrity were assessed by agarose gel electrophoresis. All samples exhib-ited 260/280 absorbance ratios of approximately 2.0, and all showed intact ribosomal 28S and 18S RNA bands in an approximate ratio of 2:1 as visu-alized by ethidium bromide staining.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures using GeneChip® Scanner 3000.
| | Sample_data_processing | Affymetrix® Microarray Suite Version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Dong Cheng,,Liu
| | Sample_contact_email | liumakoto@gmail.com
| | Sample_contact_institute | State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, affiliated to Zhejiang University
| | Sample_contact_address | Qingchun Road 79, Hangzhou, Zhejiang 310003, China
| | Sample_contact_city | HangZhou
| | Sample_contact_zip/postal_code | 310003
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429864/suppl/GSM429864.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429864/suppl/GSM429864.CHP.gz
| | Sample_series_id | GSE17184
| | Sample_data_row_count | 45101
| | |
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