Search results for the GEO ID: GSE17189 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM429903 | GPL570 |
|
1373 (HIV+)
|
Frozen Tumor Biopsy_LN
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: LN
age at diagnosis: 37
gender: Male
pathology diagnosis: DLBCL
molecular diagnosis: BL
ebv status: negative
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429903
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429903/suppl/GSM429903.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429904 | GPL570 |
|
1374 (HIV+)
|
Frozen Tumor Biopsy_Lung
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Lung
age at diagnosis: 33
gender: Male
pathology diagnosis: DLBCL
molecular diagnosis: GCB DLBCL
ebv status: negative
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429904
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429904/suppl/GSM429904.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429905 | GPL570 |
|
1375 (HIV+)
|
Frozen Tumor Biopsy_Colon
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Colon
age at diagnosis: 46
gender: Male
pathology diagnosis: DLBCL (PC)
molecular diagnosis: DLBCL_NC
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429905
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429905/suppl/GSM429905.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429906 | GPL570 |
|
1376 (HIV+)
|
Frozen Tumor Biopsy_Sm Bowel
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Sm Bowel
gender: Male
pathology diagnosis: High Grade, UC
molecular diagnosis: DLBCL_NC
ebv status: negative
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429906
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429906/suppl/GSM429906.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429907 | GPL570 |
|
1377 (HIV+)
|
Frozen Tumor Biopsy_LN
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: LN
gender: Male
pathology diagnosis: DLBCL
molecular diagnosis: BL
ebv status: negative
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429907
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429907/suppl/GSM429907.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429908 | GPL570 |
|
1378 (HIV+)
|
Frozen Tumor Biopsy_Jejunum
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Jejunum
age at diagnosis: 33
gender: Male
pathology diagnosis: DLBCL (PC)
molecular diagnosis: ABC DLBCL
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429908
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429908/suppl/GSM429908.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429909 | GPL570 |
|
1379 (HIV+)
|
Frozen Tumor Biopsy_Hilar/Lung
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Hilar/Lung
age at diagnosis: 57
gender: Male
pathology diagnosis: DLBCL
molecular diagnosis: DLBCL_NC
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429909
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429909/suppl/GSM429909.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429910 | GPL570 |
|
1380 (HIV+)
|
Frozen Tumor Biopsy_LN
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: LN
age at diagnosis: 32
gender: Male
pathology diagnosis: High Grade, UC
molecular diagnosis: BL
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429910
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429910/suppl/GSM429910.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429911 | GPL570 |
|
1383 (HIV+)
|
Frozen Tumor Biopsy_Colon
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Colon
age at diagnosis: 35
gender: Male
pathology diagnosis: DLBCL
molecular diagnosis: GCB DLBCL
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429911
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429911/suppl/GSM429911.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429912 | GPL570 |
|
1387 (HIV+)
|
Frozen Tumor Biopsy_Hilar
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Hilar
gender: Male
pathology diagnosis: DLBCL
molecular diagnosis: DLBCL_NC
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429912
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429912/suppl/GSM429912.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429913 | GPL570 |
|
1388 (HIV+)
|
Frozen Tumor Biopsy_Pleural Fluid
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Pleural Fluid
age at diagnosis: 31
gender: Male
pathology diagnosis: High Grade, UC
molecular diagnosis: ABC DLBCL
ebv status: negative
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429913
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429913/suppl/GSM429913.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429914 | GPL570 |
|
1390 (HIV+)
|
Frozen Tumor Biopsy_LN
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specimen: frozen ARL tumor biopsy
tumor biopsy origin: LN
age at diagnosis: 24
gender: Male
pathology diagnosis: DLBCL (PC)
molecular diagnosis: ABC DLBCL
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429914
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429914/suppl/GSM429914.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429915 | GPL570 |
|
1391 (HIV+)
|
Frozen Tumor Biopsy_Mediastinal/Atrial
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Mediastinal/Atrial
age at diagnosis: 38
gender: Male
pathology diagnosis: DLBCL
molecular diagnosis: BL
ebv status: negative
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429915
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429915/suppl/GSM429915.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429916 | GPL570 |
|
1392 (HIV+)
|
Frozen Tumor Biopsy_Neck
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Neck
age at diagnosis: 34
gender: Male
pathology diagnosis: High Grade, UC
molecular diagnosis: GCB DLBCL
ebv status: negative
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429916
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429916/suppl/GSM429916.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429917 | GPL570 |
|
1397 (HIV+)
|
Frozen Tumor Biopsy_LN
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: LN
age at diagnosis: 43
gender: Male
pathology diagnosis: DLBCL (PC)
molecular diagnosis: ABC DLBCL
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429917
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429917/suppl/GSM429917.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429918 | GPL570 |
|
S02 (HIV+)
|
Frozen Tumor Biopsy_LN
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: LN
gender: Male
pathology diagnosis: DLBCL (PC)
molecular diagnosis: ABC DLBCL
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429918
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429918/suppl/GSM429918.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
|
GSM429919 | GPL570 |
|
S03 (HIV+)
|
Frozen Tumor Biopsy_Spinal/Epidural
|
specimen: frozen ARL tumor biopsy
tumor biopsy origin: Spinal/Epidural
gender: Male
pathology diagnosis: DLBCL (PC)
molecular diagnosis: ABC DLBCL
ebv status: positive
|
Gene expression data from frozen ARL tumor specimen
|
Sample_geo_accession | GSM429919
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Jul 20 2009
| Sample_last_update_date | Nov 23 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using All Prep RNA/DNA kit (Qiagen, Valencia, CA) according to the manufacturers' protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 11 micrograms of cRNA were hybridized for 16 hours at 45C on U133 plus 2.0 arrays from Affymetrix. Arrays were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning was performed by the Affymetrix 3000 Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL570
| Sample_contact_name | Karen,,Deffenbacher
| Sample_contact_email | kdeffenb@unmc.edu
| Sample_contact_phone | 402-559-7753
| Sample_contact_fax | 402-559-4990
| Sample_contact_laboratory | Chan
| Sample_contact_department | Pathology and Microbiology
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 987660 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-7660
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM429nnn/GSM429919/suppl/GSM429919.CEL.gz
| Sample_series_id | GSE17189
| Sample_series_id | GSE17372
| Sample_data_row_count | 54675
| |
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