Search results for the GEO ID: GSE17215  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM431121 | GPL3921 |
|
HMLER, paclitaxel, rep1
|
HMLER breast cancer cells after 10nM paclitaxel treatment
|
strain: HMLER
tissue: breast
genotype: SV40ER, hTERT, HrasV12
agent: paclitaxel
|
Global gene expression signature upon paclitaxel treatment
|
| Sample_geo_accession | GSM431121
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Jul 20 2009
| | Sample_last_update_date | Aug 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for one week with paclitaxel (10nM) or salinomycin (1uM); after one week of treatment, the cells were cultured in the absence of compound for 3 weeks. Medium changes with performed every 2 days.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM431nnn/GSM431121/suppl/GSM431121.CEL.gz
| | Sample_series_id | GSE17215
| | Sample_data_row_count | 22277
| | |
|
GSM431122 | GPL3921 |
|
HMLER, paclitaxel, rep2
|
HMLER breast cancer cells after 10nM paclitaxel treatment
|
strain: HMLER
tissue: breast
genotype: SV40ER, hTERT, HrasV12
agent: paclitaxel
|
Global gene expression signature upon paclitaxel treatment
|
| Sample_geo_accession | GSM431122
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Jul 20 2009
| | Sample_last_update_date | Aug 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for one week with paclitaxel (10nM) or salinomycin (1uM); after one week of treatment, the cells were cultured in the absence of compound for 3 weeks. Medium changes with performed every 2 days.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM431nnn/GSM431122/suppl/GSM431122.CEL.gz
| | Sample_series_id | GSE17215
| | Sample_data_row_count | 22277
| | |
|
GSM431123 | GPL3921 |
|
HMLER, paclitaxel, rep3
|
HMLER breast cancer cells after 10nM paclitaxel treatment
|
strain: HMLER
tissue: breast
genotype: SV40ER, hTERT, HrasV12
agent: paclitaxel
|
Global gene expression signature upon paclitaxel treatment
|
| Sample_geo_accession | GSM431123
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Jul 20 2009
| | Sample_last_update_date | Aug 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for one week with paclitaxel (10nM) or salinomycin (1uM); after one week of treatment, the cells were cultured in the absence of compound for 3 weeks. Medium changes with performed every 2 days.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM431nnn/GSM431123/suppl/GSM431123.CEL.gz
| | Sample_series_id | GSE17215
| | Sample_data_row_count | 22277
| | |
|
GSM431124 | GPL3921 |
|
HMLER, salinomycin, rep1
|
HMLER breast cancer cells after 1uM salinomycin treatment
|
strain: HMLER
tissue: breast
genotype: SV40ER, hTERT, HrasV12
agent: salinomycin
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM431124
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Jul 20 2009
| | Sample_last_update_date | Aug 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for one week with paclitaxel (10nM) or salinomycin (1uM); after one week of treatment, the cells were cultured in the absence of compound for 3 weeks. Medium changes with performed every 2 days.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM431nnn/GSM431124/suppl/GSM431124.CEL.gz
| | Sample_series_id | GSE17215
| | Sample_data_row_count | 22277
| | |
|
GSM431125 | GPL3921 |
|
HMLER, salinomycin, rep2
|
HMLER breast cancer cells after 1uM salinomycin treatment
|
strain: HMLER
tissue: breast
genotype: SV40ER, hTERT, HrasV12
agent: salinomycin
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM431125
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Jul 20 2009
| | Sample_last_update_date | Aug 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for one week with paclitaxel (10nM) or salinomycin (1uM); after one week of treatment, the cells were cultured in the absence of compound for 3 weeks. Medium changes with performed every 2 days.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM431nnn/GSM431125/suppl/GSM431125.CEL.gz
| | Sample_series_id | GSE17215
| | Sample_data_row_count | 22277
| | |
|
GSM431126 | GPL3921 |
|
HMLER, salinomycin, rep3
|
HMLER breast cancer cells after 1uM salinomycin treatment
|
strain: HMLER
tissue: breast
genotype: SV40ER, hTERT, HrasV12
agent: salinomycin
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM431126
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Jul 20 2009
| | Sample_last_update_date | Aug 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated for one week with paclitaxel (10nM) or salinomycin (1uM); after one week of treatment, the cells were cultured in the absence of compound for 3 weeks. Medium changes with performed every 2 days.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM431nnn/GSM431126/suppl/GSM431126.CEL.gz
| | Sample_series_id | GSE17215
| | Sample_data_row_count | 22277
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
