Search results for the GEO ID: GSE17340  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM433623 | GPL570 |
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Seminal vesicle, biological replicate 1
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Normal seminal vesicle from adult man
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tissue: Seminal vesicle
age: adult
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Gene expression from adult Human seminal vesicle
|
| Sample_geo_accession | GSM433623
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jul 27 2009
| | Sample_last_update_date | Jul 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent according to the manufacturer instructions and was further cleaned up using a QIAGEN RNeasy Mini column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 500ng of total RNA were used for the synthsis of biotynilated cRNA (GeneChip® 3’ IVT Express Kit User Manual).
| | Sample_hyb_protocol | Purified labeled cRNAs (20µg) were fragmented and hybridized (16 hours at 45°C) to HG-U133 Plus 2.0 GeneChip® arrays (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned with a GeneChip® scanner 3000 7G (Affymetrix). Raw image files (DAT) as well as feature-level data files (CEL) were finally generated using the Affymetrix GeneChip® Command Console (AGCC).
| | Sample_data_processing | Raw data were normalised using the RMA (Robust Multi-array Analysis; Irizari et al., 2003) in the AMEN (Annotation, Mapping, Expression, Network; Chalmel and Primig, 2008) suite of tools.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charles,,PINEAU
| | Sample_contact_email | charles.pineau@rennes.inserm.fr
| | Sample_contact_phone | +33 (0)2 2323 5279
| | Sample_contact_fax | +33 (0)2 2323 5282
| | Sample_contact_laboratory | Proteomics Platform Biogenouest
| | Sample_contact_department | GERHM-U625
| | Sample_contact_institute | INSERM
| | Sample_contact_address | Campus de Beaulieu (batiment 24)
| | Sample_contact_city | Rennes
| | Sample_contact_zip/postal_code | 35042
| | Sample_contact_country | France
| | Sample_contact_web_link | www.u625.rennes.inserm.fr/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM433nnn/GSM433623/suppl/GSM433623.CEL.gz
| | Sample_series_id | GSE17340
| | Sample_data_row_count | 54675
| | |
|
GSM433624 | GPL570 |
|
Seminal vesicle, biological replicate 2
|
Normal seminal vesicle from adult man
|
tissue: Seminal vesicle
age: adult
|
Gene expression from adult Human seminal vesicle
|
| Sample_geo_accession | GSM433624
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jul 27 2009
| | Sample_last_update_date | Jul 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent according to the manufacturer instructions and was further cleaned up using a QIAGEN RNeasy Mini column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 500ng of total RNA were used for the synthsis of biotynilated cRNA (GeneChip® 3’ IVT Express Kit User Manual).
| | Sample_hyb_protocol | Purified labeled cRNAs (20µg) were fragmented and hybridized (16 hours at 45°C) to HG-U133 Plus 2.0 GeneChip® arrays (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned with a GeneChip® scanner 3000 7G (Affymetrix). Raw image files (DAT) as well as feature-level data files (CEL) were finally generated using the Affymetrix GeneChip® Command Console (AGCC).
| | Sample_data_processing | Raw data were normalised using the RMA (Robust Multi-array Analysis; Irizari et al., 2003) in the AMEN (Annotation, Mapping, Expression, Network; Chalmel and Primig, 2008) suite of tools.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charles,,PINEAU
| | Sample_contact_email | charles.pineau@rennes.inserm.fr
| | Sample_contact_phone | +33 (0)2 2323 5279
| | Sample_contact_fax | +33 (0)2 2323 5282
| | Sample_contact_laboratory | Proteomics Platform Biogenouest
| | Sample_contact_department | GERHM-U625
| | Sample_contact_institute | INSERM
| | Sample_contact_address | Campus de Beaulieu (batiment 24)
| | Sample_contact_city | Rennes
| | Sample_contact_zip/postal_code | 35042
| | Sample_contact_country | France
| | Sample_contact_web_link | www.u625.rennes.inserm.fr/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM433nnn/GSM433624/suppl/GSM433624.CEL.gz
| | Sample_series_id | GSE17340
| | Sample_data_row_count | 54675
| | |
|
GSM433625 | GPL570 |
|
Seminal vesicle, biological replicate 3
|
Normal seminal vesicle from adult man
|
tissue: Seminal vesicle
age: adult
|
Gene expression from adult Human seminal vesicle
|
| Sample_geo_accession | GSM433625
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jul 27 2009
| | Sample_last_update_date | Jul 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent according to the manufacturer instructions and was further cleaned up using a QIAGEN RNeasy Mini column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 500ng of total RNA were used for the synthsis of biotynilated cRNA (GeneChip® 3’ IVT Express Kit User Manual).
| | Sample_hyb_protocol | Purified labeled cRNAs (20µg) were fragmented and hybridized (16 hours at 45°C) to HG-U133 Plus 2.0 GeneChip® arrays (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned with a GeneChip® scanner 3000 7G (Affymetrix). Raw image files (DAT) as well as feature-level data files (CEL) were finally generated using the Affymetrix GeneChip® Command Console (AGCC).
| | Sample_data_processing | Raw data were normalised using the RMA (Robust Multi-array Analysis; Irizari et al., 2003) in the AMEN (Annotation, Mapping, Expression, Network; Chalmel and Primig, 2008) suite of tools.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charles,,PINEAU
| | Sample_contact_email | charles.pineau@rennes.inserm.fr
| | Sample_contact_phone | +33 (0)2 2323 5279
| | Sample_contact_fax | +33 (0)2 2323 5282
| | Sample_contact_laboratory | Proteomics Platform Biogenouest
| | Sample_contact_department | GERHM-U625
| | Sample_contact_institute | INSERM
| | Sample_contact_address | Campus de Beaulieu (batiment 24)
| | Sample_contact_city | Rennes
| | Sample_contact_zip/postal_code | 35042
| | Sample_contact_country | France
| | Sample_contact_web_link | www.u625.rennes.inserm.fr/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM433nnn/GSM433625/suppl/GSM433625.CEL.gz
| | Sample_series_id | GSE17340
| | Sample_data_row_count | 54675
| | |
|
GSM433626 | GPL570 |
|
Seminal vesicle, biological replicate 4
|
Normal seminal vesicle from adult man
|
tissue: Seminal vesicle
age: adult
|
Gene expression from adult Human seminal vesicle
|
| Sample_geo_accession | GSM433626
| | Sample_status | Public on Jun 01 2010
| | Sample_submission_date | Jul 27 2009
| | Sample_last_update_date | Jul 27 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent according to the manufacturer instructions and was further cleaned up using a QIAGEN RNeasy Mini column.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 500ng of total RNA were used for the synthsis of biotynilated cRNA (GeneChip® 3’ IVT Express Kit User Manual).
| | Sample_hyb_protocol | Purified labeled cRNAs (20µg) were fragmented and hybridized (16 hours at 45°C) to HG-U133 Plus 2.0 GeneChip® arrays (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned with a GeneChip® scanner 3000 7G (Affymetrix). Raw image files (DAT) as well as feature-level data files (CEL) were finally generated using the Affymetrix GeneChip® Command Console (AGCC).
| | Sample_data_processing | Raw data were normalised using the RMA (Robust Multi-array Analysis; Irizari et al., 2003) in the AMEN (Annotation, Mapping, Expression, Network; Chalmel and Primig, 2008) suite of tools.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Charles,,PINEAU
| | Sample_contact_email | charles.pineau@rennes.inserm.fr
| | Sample_contact_phone | +33 (0)2 2323 5279
| | Sample_contact_fax | +33 (0)2 2323 5282
| | Sample_contact_laboratory | Proteomics Platform Biogenouest
| | Sample_contact_department | GERHM-U625
| | Sample_contact_institute | INSERM
| | Sample_contact_address | Campus de Beaulieu (batiment 24)
| | Sample_contact_city | Rennes
| | Sample_contact_zip/postal_code | 35042
| | Sample_contact_country | France
| | Sample_contact_web_link | www.u625.rennes.inserm.fr/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM433nnn/GSM433626/suppl/GSM433626.CEL.gz
| | Sample_series_id | GSE17340
| | Sample_data_row_count | 54675
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