Search results for the GEO ID: GSE17368  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM434065 | GPL570 |
|
Epiphyseal cartilage, primary
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, primary (YubCp0)
|
Epiphyseal cartilage, primary
|
| Sample_geo_accession | GSM434065
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434065/suppl/GSM434065.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434065/suppl/GSM434065.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
GSM434067 | GPL570 |
|
Epiphyseal cartilage, P2
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, passage 2 (YubCp2)
|
Epiphyseal cartilage, P2
|
| Sample_geo_accession | GSM434067
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434067/suppl/GSM434067.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434067/suppl/GSM434067.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
GSM434068 | GPL570 |
|
Epiphyseal cartilage, P3
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, passage 3 (YubCp3)
|
Epiphyseal cartilage, P3
|
| Sample_geo_accession | GSM434068
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434068/suppl/GSM434068.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434068/suppl/GSM434068.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
GSM434069 | GPL570 |
|
Epiphyseal cartilage, P4
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, passage 4 (YubCp4)
|
Epiphyseal cartilage, P4
|
| Sample_geo_accession | GSM434069
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434069/suppl/GSM434069.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434069/suppl/GSM434069.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
GSM434070 | GPL570 |
|
Epiphyseal cartilage, P5
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, passage 5 (YubCp5)
|
Epiphyseal cartilage, P5
|
| Sample_geo_accession | GSM434070
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434070/suppl/GSM434070.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434070/suppl/GSM434070.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
GSM434071 | GPL570 |
|
Epiphyseal cartilage, P6
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, passage 6 (YubCp6)
|
Epiphyseal cartilage, P6
|
| Sample_geo_accession | GSM434071
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434071/suppl/GSM434071.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434071/suppl/GSM434071.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
GSM434072 | GPL570 |
|
Epiphyseal cartilage, P7
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, passage 7 (YubCp7)
|
Epiphyseal cartilage, P7
|
| Sample_geo_accession | GSM434072
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434072/suppl/GSM434072.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434072/suppl/GSM434072.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
GSM434073 | GPL570 |
|
Epiphyseal cartilage, P8
|
total RNA
|
cell type: Postnatal epiphyseal cartilage, passage 8 (YubCp8)
|
Epiphyseal cartilage, P8
|
| Sample_geo_accession | GSM434073
| | Sample_status | Public on Mar 22 2011
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Mar 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434073/suppl/GSM434073.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434073/suppl/GSM434073.EXP.gz
| | Sample_series_id | GSE17368
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
