Search results for the GEO ID: GSE17371  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM434104 | GPL96 |
|
Muscle diet-resistant subject 1
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-resistant
|
n/a
|
| Sample_geo_accession | GSM434104
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434104/suppl/GSM434104_RTP001673.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434105 | GPL96 |
|
Muscle diet-resistant subject 2
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-resistant
|
n/a
|
| Sample_geo_accession | GSM434105
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434105/suppl/GSM434105_RTP001674.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434106 | GPL96 |
|
Muscle diet-resistant subject 3
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-resistant
|
n/a
|
| Sample_geo_accession | GSM434106
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434106/suppl/GSM434106_RTP001675.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434107 | GPL96 |
|
Muscle diet-sensitive subject 1
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-sensitive
|
n/a
|
| Sample_geo_accession | GSM434107
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434107/suppl/GSM434107_RTP001676.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434108 | GPL96 |
|
Muscle diet-sensitive subject 2
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-sensitive
|
n/a
|
| Sample_geo_accession | GSM434108
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434108/suppl/GSM434108_RTP001677.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434109 | GPL96 |
|
Muscle diet-resistant subject 4
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-resistant
|
n/a
|
| Sample_geo_accession | GSM434109
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434109/suppl/GSM434109_RTP001678.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434110 | GPL96 |
|
Muscle diet-resistant subject 5
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-resistant
|
n/a
|
| Sample_geo_accession | GSM434110
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434110/suppl/GSM434110_RTP001679.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434111 | GPL96 |
|
Muscle diet-sensitive subject 3
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-sensitive
|
n/a
|
| Sample_geo_accession | GSM434111
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434111/suppl/GSM434111_RTP001680.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434112 | GPL96 |
|
Muscle diet-sensitive subject 4
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-sensitive
|
n/a
|
| Sample_geo_accession | GSM434112
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434112/suppl/GSM434112_RTP001681.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434113 | GPL96 |
|
Muscle diet-resistant subject 6
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-resistant
|
n/a
|
| Sample_geo_accession | GSM434113
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434113/suppl/GSM434113_RTP001682.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434114 | GPL96 |
|
Muscle diet-sensitive subject 5
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-sensitive
|
n/a
|
| Sample_geo_accession | GSM434114
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434114/suppl/GSM434114_RTP001683.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
GSM434115 | GPL96 |
|
Muscle diet-sensitive subject 6
|
Rectus femoris muscle
|
phenotype: obese
gender: Female
tissue: Rectus femoris muscle
responsiveness: diet-sensitive
|
n/a
|
| Sample_geo_accession | GSM434115
| | Sample_status | Public on Jul 29 2009
| | Sample_submission_date | Jul 28 2009
| | Sample_last_update_date | Jul 28 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared following 2 rounds of low-template amplification according to protocol from Affymetrix (GeneChip Eukaryotic Small Sample Target Labeling Assay Version II Technical Note. Santa Clara, CA.), starting from 400 ng of total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U-133A array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Joan ,,Stuart
| | Sample_contact_email | joan.s.stuart@gsk.com
| | Sample_contact_institute | GSK
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | RTP
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434115/suppl/GSM434115_RTP001684.CEL.gz
| | Sample_series_id | GSE17371
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
