Search results for the GEO ID: GSE17384 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM434390 | GPL1355 |
|
Nontumor liver at 67 weeks_1
|
LEC rat nontumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 67 week old LEC rat noutumor liver tissue
|
Sample_geo_accession | GSM434390
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434390/suppl/GSM434390.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434391 | GPL1355 |
|
Nontumor liver at 67 weeks_2
|
LEC rat nontumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 67 week old LEC rat noutumor liver tissue
|
Sample_geo_accession | GSM434391
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434391/suppl/GSM434391.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434392 | GPL1355 |
|
Nontumor liver at 67 weeks_3
|
LEC rat nontumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 67 week old LEC rat noutumor liver tissue
|
Sample_geo_accession | GSM434392
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434392/suppl/GSM434392.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434393 | GPL1355 |
|
Nontumor liver at 67 weeks_4
|
LEC rat nontumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 67 week old LEC rat noutumor liver tissue
|
Sample_geo_accession | GSM434393
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434393/suppl/GSM434393.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434394 | GPL1355 |
|
Control liver at 67 weeks
|
LEA rat liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Agouti (LEA)
age: 67 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 67 week old LEA rat noutumor liver tissue
|
Sample_geo_accession | GSM434394
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434394/suppl/GSM434394.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434395 | GPL1355 |
|
Liver at 4 weeks
|
LEC rat liver tissue at 4 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 4 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 4 week old LEC rat noutumor liver tissue
|
Sample_geo_accession | GSM434395
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434395/suppl/GSM434395.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434396 | GPL1355 |
|
Liver at 26 weeks
|
LEC rat liver tissue at 26 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 26 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 26 week old LEC rat noutumor liver tissue
|
Sample_geo_accession | GSM434396
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434396/suppl/GSM434396.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434397 | GPL1355 |
|
Liver at 39 weeks
|
LEC rat liver tissue at 39 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 39 weeks old
tissue: liver
disease status: normal
|
Gene expression data from 39 week old LEC rat noutumor liver tissue
|
Sample_geo_accession | GSM434397
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434397/suppl/GSM434397.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434398 | GPL1355 |
|
Tumor liver at 67 week_1
|
LEC rat tumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: tumor
|
Gene expression data from 67 week old LEC rat tumor liver tissue
|
Sample_geo_accession | GSM434398
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434398/suppl/GSM434398.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434399 | GPL1355 |
|
Tumor liver at 67 week_2
|
LEC rat tumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: tumor
|
Gene expression data from 67 week old LEC rat tumor liver tissue
|
Sample_geo_accession | GSM434399
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434399/suppl/GSM434399.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
|
GSM434400 | GPL1355 |
|
Tumor liver at 67 week_3
|
LEC rat tumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: tumor
|
Gene expression data from 67 week old LEC rat tumor liver tissue
|
Sample_geo_accession | GSM434400
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434400/suppl/GSM434400.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
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GSM434401 | GPL1355 |
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Tumor liver at 67 week_4
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LEC rat tumor liver tissue at 67 weeks
|
gender: male
animal handling: specific pathogen-free (SPF), viral antibody-free (VAF)
strain: Long Evans Cinnamon (LEC/Crj)
age: 67 weeks old
tissue: liver
disease status: tumor
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Gene expression data from 67 week old LEC rat tumor liver tissue
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Sample_geo_accession | GSM434401
| Sample_status | Public on Jul 30 2009
| Sample_submission_date | Jul 28 2009
| Sample_last_update_date | Jul 29 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_growth_protocol_ch1 | Specific pathogen-free (SPF) and viral antibody-free (VAF) male LEC and LEA rats were maintained in a controlled environment.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from tissue samples using RNeasy kit (Qiagen) and digested with DNase I (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using Hewlett-Packard GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software version 1.4 (Affymetrix) using Affymetrix default analysis settings, and were normalized by robust multi-array analysis (RMA) using the R 2.6.1 statistical software together and a Bioconductor package.
| Sample_platform_id | GPL1355
| Sample_contact_name | Akihito,,Tsubota
| Sample_contact_email | atsubo@jikei.ac.jp
| Sample_contact_phone | +81-4-7164-1111
| Sample_contact_fax | +81-4-7166-8638
| Sample_contact_department | Institute of Clinical Medicine and Research
| Sample_contact_institute | Jikei University School of Medicine
| Sample_contact_address | 163-1 Kashiwa-shita
| Sample_contact_city | Kashiwa
| Sample_contact_state | Chiba
| Sample_contact_zip/postal_code | 277-8567
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434401/suppl/GSM434401.CEL.gz
| Sample_series_id | GSE17384
| Sample_data_row_count | 31099
| |
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