Result

Search results for the GEO ID: GSE17404

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM434639

GPL1261

3T3-L1 adipocyte tissue culture, LA, biological rep1

3T3-L1 adipocyte tissue culture, LA fed

cell line: 3T3-L1 cell type: adipocyte treatment: linoleic acid

LA_1

Sample_geo_accession	GSM434639
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434639/suppl/GSM434639.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434640

GPL1261

3T3-L1 adipocyte tissue culture, LA, biological rep2

3T3-L1 adipocyte tissue culture, LA fed

cell line: 3T3-L1 cell type: adipocyte treatment: linoleic acid

LA_2

Sample_geo_accession	GSM434640
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434640/suppl/GSM434640.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434641

GPL1261

3T3-L1 adipocyte tissue culture, LA, biological rep3

3T3-L1 adipocyte tissue culture, LA fed

cell line: 3T3-L1 cell type: adipocyte treatment: linoleic acid

LA_3

Sample_geo_accession	GSM434641
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434641/suppl/GSM434641.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434642

GPL1261

3T3-L1 adipocyte tissue culture, CLA, biological rep1

3T3-L1 adipocyte tissue culture, CLA fed

cell line: 3T3-L1 cell type: adipocyte treatment: conjugated linoleic acid

CLA_1

Sample_geo_accession	GSM434642
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434642/suppl/GSM434642.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434643

GPL1261

3T3-L1 adipocyte tissue culture, CLA, biological rep2

3T3-L1 adipocyte tissue culture, CLA fed

cell line: 3T3-L1 cell type: adipocyte treatment: conjugated linoleic acid

CLA_2

Sample_geo_accession	GSM434643
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434643/suppl/GSM434643.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434644

GPL1261

3T3-L1 adipocyte tissue culture, CLA, biological rep3

3T3-L1 adipocyte tissue culture, CLA fed

cell line: 3T3-L1 cell type: adipocyte treatment: conjugated linoleic acid

CLA_3

Sample_geo_accession	GSM434644
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434644/suppl/GSM434644.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434645

GPL1261

3T3-L1 adipocyte tissue culture, phenformin, biological rep1

3T3-L1 adipocyte tissue culture, phenformin fed

cell line: 3T3-L1 cell type: adipocyte treatment: phenformin

PFM_1

Sample_geo_accession	GSM434645
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434645/suppl/GSM434645.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434646

GPL1261

3T3-L1 adipocyte tissue culture, phenformin, biological rep2

3T3-L1 adipocyte tissue culture, phenformin fed

cell line: 3T3-L1 cell type: adipocyte treatment: phenformin

PFM_2

Sample_geo_accession	GSM434646
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434646/suppl/GSM434646.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

GSM434647

GPL1261

3T3-L1 adipocyte tissue culture, phenformin, biological rep3

3T3-L1 adipocyte tissue culture, phenformin fed

cell line: 3T3-L1 cell type: adipocyte treatment: phenformin

PFM_3

Sample_geo_accession	GSM434647
Sample_status	Public on Aug 10 2010
Sample_submission_date	Jul 29 2009
Sample_last_update_date	Mar 05 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm.
Sample_data_processing	The data was analysed using R 2.9.0 with Bioconductor 2.4. Arrays were normalised via RMA, and all treatments were compared to the control LA via the limma package. Benjamini-Hochberg adjusted p-values were used as significance measurement.
Sample_data_processing
Sample_data_processing	The limma data are linked to the Series GSE17404 record as supplementary files 'GSE17404_limma_CLAvsLA.txt', 'GSE17404_limma_PFMvsLA.txt', and 'GSE17404_limma_PFMvsCLA.txt'.
Sample_platform_id	GPL1261
Sample_contact_name	Jean-Jack,M.,Riethoven
Sample_contact_email	jeanjack@unl.edu
Sample_contact_laboratory	Bioinformatics Core Research Facility
Sample_contact_department	Beadle Center for Biotechnology
Sample_contact_institute	University of Nebraska-Lincoln
Sample_contact_address	1901 Vine Street
Sample_contact_city	Lincoln
Sample_contact_state	NE
Sample_contact_zip/postal_code	68588-0665
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM434nnn/GSM434647/suppl/GSM434647.CEL.gz
Sample_series_id	GSE17404
Sample_data_row_count	45101

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