Search results for the GEO ID: GSE17440  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM435066 | GPL570 |
|
FrontalC_HIVMDD_2
|
Frozen_frontal_Cortex_HIVMDD
|
tissue: Brain, frontal cortex
latest mdd visit: 12 mo
age: 38
hiv status: HIV+
gender: Male
pmi: 12
|
Gene expression data from frontal cortex of patient CA143
|
| Sample_geo_accession | GSM435066
| | Sample_status | Public on Feb 01 2010
| | Sample_submission_date | Jul 30 2009
| | Sample_last_update_date | Sep 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction per manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Erick,T,Tatro
| | Sample_contact_email | etatro@ucsd.edu
| | Sample_contact_phone | 858-246-0653
| | Sample_contact_fax | 858-534-4484
| | Sample_contact_laboratory | Tatro
| | Sample_contact_department | Psychiatry
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0603
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435066/suppl/GSM435066.CEL.gz
| | Sample_series_id | GSE17440
| | Sample_series_id | GSE17491
| | Sample_data_row_count | 54675
| | |
|
GSM435067 | GPL570 |
|
FrontalC_HIV_4
|
Frozen_frontal_Cortex_HIV
|
tissue: Brain, frontal cortex
latest mdd visit: NO
age: 50
hiv status: HIV+
gender: Male
pmi: 12
|
Gene expression data from frontal cortex of patient CA146
|
| Sample_geo_accession | GSM435067
| | Sample_status | Public on Feb 01 2010
| | Sample_submission_date | Jul 30 2009
| | Sample_last_update_date | Sep 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction per manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Erick,T,Tatro
| | Sample_contact_email | etatro@ucsd.edu
| | Sample_contact_phone | 858-246-0653
| | Sample_contact_fax | 858-534-4484
| | Sample_contact_laboratory | Tatro
| | Sample_contact_department | Psychiatry
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0603
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435067/suppl/GSM435067.CEL.gz
| | Sample_series_id | GSE17440
| | Sample_series_id | GSE17491
| | Sample_data_row_count | 54675
| | |
|
GSM435068 | GPL570 |
|
FrontalC_HIVMDD_4
|
Frozen_frontal_Cortex_HIVMDD
|
tissue: Brain, frontal cortex
latest mdd visit: 6 mo
age: 34
hiv status: HIV+
gender: Male
pmi: 4
|
Gene expression data from frontal cortex of patient CA236
|
| Sample_geo_accession | GSM435068
| | Sample_status | Public on Feb 01 2010
| | Sample_submission_date | Jul 30 2009
| | Sample_last_update_date | Dec 21 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction per manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Erick,T,Tatro
| | Sample_contact_email | etatro@ucsd.edu
| | Sample_contact_phone | 858-246-0653
| | Sample_contact_fax | 858-534-4484
| | Sample_contact_laboratory | Tatro
| | Sample_contact_department | Psychiatry
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0603
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435068/suppl/GSM435068.CEL.gz
| | Sample_series_id | GSE17440
| | Sample_series_id | GSE17491
| | Sample_data_row_count | 54675
| | |
|
GSM435069 | GPL570 |
|
FrontalC_HIV_1
|
Frozen_frontal_cortex_HIV
|
tissue: Brain, frontal cortex
latest mdd visit: NO
age: 54
hiv status: HIV+
gender: Male
pmi: 12
|
Gene expression data from frontal cortex of patient CC103
|
| Sample_geo_accession | GSM435069
| | Sample_status | Public on Feb 01 2010
| | Sample_submission_date | Jul 30 2009
| | Sample_last_update_date | Dec 21 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction per manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Erick,T,Tatro
| | Sample_contact_email | etatro@ucsd.edu
| | Sample_contact_phone | 858-246-0653
| | Sample_contact_fax | 858-534-4484
| | Sample_contact_laboratory | Tatro
| | Sample_contact_department | Psychiatry
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0603
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435069/suppl/GSM435069.CEL.gz
| | Sample_series_id | GSE17440
| | Sample_series_id | GSE17491
| | Sample_data_row_count | 54675
| | |
|
GSM435070 | GPL570 |
|
FrontalC_HIV_2
|
Frozen_frontal_cortex_HIV
|
tissue: Brain, frontal cortex
latest mdd visit: NO
age: 56
hiv status: HIV+
gender: Male
pmi: 12
|
Gene expression data from frontal cortex of patient CC141
|
| Sample_geo_accession | GSM435070
| | Sample_status | Public on Feb 01 2010
| | Sample_submission_date | Jul 30 2009
| | Sample_last_update_date | Sep 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction per manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Erick,T,Tatro
| | Sample_contact_email | etatro@ucsd.edu
| | Sample_contact_phone | 858-246-0653
| | Sample_contact_fax | 858-534-4484
| | Sample_contact_laboratory | Tatro
| | Sample_contact_department | Psychiatry
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0603
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435070/suppl/GSM435070.CEL.gz
| | Sample_series_id | GSE17440
| | Sample_series_id | GSE17491
| | Sample_data_row_count | 54675
| | |
|
GSM435071 | GPL570 |
|
FrontalC_HIV_3
|
Frozen_frontal_cortex_HIV
|
tissue: Brain, frontal cortex
latest mdd visit: NO
age: 50
hiv status: HIV+
gender: Male
pmi: 15
|
Gene expression data from frontal cortex of patient CC147
|
| Sample_geo_accession | GSM435071
| | Sample_status | Public on Feb 01 2010
| | Sample_submission_date | Jul 30 2009
| | Sample_last_update_date | Sep 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction per manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Erick,T,Tatro
| | Sample_contact_email | etatro@ucsd.edu
| | Sample_contact_phone | 858-246-0653
| | Sample_contact_fax | 858-534-4484
| | Sample_contact_laboratory | Tatro
| | Sample_contact_department | Psychiatry
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0603
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435071/suppl/GSM435071.CEL.gz
| | Sample_series_id | GSE17440
| | Sample_series_id | GSE17491
| | Sample_data_row_count | 54675
| | |
|
GSM435072 | GPL570 |
|
FrontalC_HIVMDD_3
|
Frozen_frontal_cortex_HIVMDD
|
tissue: Brain, frontal cortex
latest mdd visit: 12
age: 56
hiv status: HIV+
gender: Male
pmi: 12
|
Gene expression data from frontal cortex of patient CC207
|
| Sample_geo_accession | GSM435072
| | Sample_status | Public on Feb 01 2010
| | Sample_submission_date | Jul 30 2009
| | Sample_last_update_date | Sep 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction per manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Erick,T,Tatro
| | Sample_contact_email | etatro@ucsd.edu
| | Sample_contact_phone | 858-246-0653
| | Sample_contact_fax | 858-534-4484
| | Sample_contact_laboratory | Tatro
| | Sample_contact_department | Psychiatry
| | Sample_contact_institute | University of California San Diego
| | Sample_contact_address | 9500 Gilman Dr
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92093-0603
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435072/suppl/GSM435072.CEL.gz
| | Sample_series_id | GSE17440
| | Sample_series_id | GSE17491
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
