Search results for the GEO ID: GSE17475  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM435857 | GPL96 |
|
Lung Adenocarcinoma #19
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 58
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435857
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435857/suppl/GSM435857.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435858 | GPL96 |
|
Lung Adenocarcinoma #20
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 59
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 1
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 1
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435858
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435858/suppl/GSM435858.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435859 | GPL96 |
|
Lung Adenocarcinoma #21
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 75
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435859
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435859/suppl/GSM435859.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435860 | GPL96 |
|
Lung Adenocarcinoma #22
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 60
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 1
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435860
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435860/suppl/GSM435860.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435861 | GPL96 |
|
Lung Adenocarcinoma #23
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 47
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 1
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 1
smoking status (n.a.=data not available): n.a.
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435861
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435861/suppl/GSM435861.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435862 | GPL96 |
|
Lung Adenocarcinoma #24
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 61
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 4
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435862
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435862/suppl/GSM435862.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435863 | GPL96 |
|
Lung Adenocarcinoma #25
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 64
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 1
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435863
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435863/suppl/GSM435863.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435864 | GPL96 |
|
Lung Adenocarcinoma #26
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 70
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 1
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435864
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435864/suppl/GSM435864.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435865 | GPL96 |
|
Lung Adenocarcinoma #36
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 72
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435865
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435865/suppl/GSM435865.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435866 | GPL96 |
|
Lung Adenocarcinoma #37
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 67
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435866
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435866/suppl/GSM435866.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435867 | GPL96 |
|
Lung Adenocarcinoma #38
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 82
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 4
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435867
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435867/suppl/GSM435867.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435868 | GPL96 |
|
Lung Adenocarcinoma #39
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G1
age (years at surgery): 69
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435868
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435868/suppl/GSM435868.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435869 | GPL96 |
|
Lung Adenocarcinoma #40
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G1
age (years at surgery): 83
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 1
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435869
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435869/suppl/GSM435869.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435870 | GPL96 |
|
Lung Adenocarcinoma #41
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 51
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435870
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435870/suppl/GSM435870.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435871 | GPL96 |
|
Lung Adenocarcinoma #42
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 78
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): no
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435871
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435871/suppl/GSM435871.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435872 | GPL96 |
|
Lung Adenocarcinoma #43
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 59
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 4
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435872
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435872/suppl/GSM435872.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435873 | GPL96 |
|
Lung Adenocarcinoma #45
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 69
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435873
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435873/suppl/GSM435873.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435874 | GPL96 |
|
Lung Adenocarcinoma #47
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 56
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 1
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435874
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435874/suppl/GSM435874.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435875 | GPL96 |
|
Lung Adenocarcinoma #49
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 72
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435875
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435875/suppl/GSM435875.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435876 | GPL96 |
|
Lung Adenocarcinoma #51
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 65
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 2
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435876
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435876/suppl/GSM435876.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435877 | GPL96 |
|
Lung Adenocarcinoma #52
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 70
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 1
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435877
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435877/suppl/GSM435877.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435878 | GPL96 |
|
Lung Adenocarcinoma #53
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 62
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 1
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435878
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435878/suppl/GSM435878.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435879 | GPL96 |
|
Lung Adenocarcinoma #54
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 54
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 1
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435879
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435879/suppl/GSM435879.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435880 | GPL96 |
|
Lung Adenocarcinoma #55
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 77
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435880
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435880/suppl/GSM435880.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435881 | GPL96 |
|
Lung Adenocarcinoma #56
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 67
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435881
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435881/suppl/GSM435881.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435882 | GPL96 |
|
Lung Adenocarcinoma #57
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G2
age (years at surgery): 73
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 1
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): 0
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): yes
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435882
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435882/suppl/GSM435882.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435883 | GPL96 |
|
Lung Adenocarcinoma #58
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G3
age (years at surgery): 56
sex (m=male; f=female): M
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 1
distant metastasis (according to tnm classification 2002): X
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): n.a.
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435883
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435883/suppl/GSM435883.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
| | |
|
GSM435884 | GPL96 |
|
Lung Adenocarcinoma #61
|
Lung Adenocarcinoma
|
cell type: lung adenocarcinoma
tissue: tumor
grading: G1
age (years at surgery): 76
sex (m=male; f=female): F
tumor stage (according to tnm classification 2002): 2
nodal status (according to tnm classification 2002): 0
distant metastasis (according to tnm classification 2002): X
resection status (according to tnm classification 2002): 0
smoking status (n.a.=data not available): n.a.
|
Gene expression data from lung adneocarcinoma
|
| Sample_geo_accession | GSM435884
| | Sample_status | Public on Aug 04 2009
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Jan 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from each frozen tumor specimen using the Qiashredder (Qiagen, Hilden, Germany) and the RNeasy Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were generated according to the manufacturer’s protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Targets were fragmented at 94°C for 35 minutes and 15µg of it was hybridized to HG-U133A chips 45°C for 16 hours. The arrays were washed and stained with 10µg/ml streptavidin-phycoerythrin. After signal amplification with biotinylated anti-streptavidin antibodies.
| | Sample_scan_protocol | The arrays were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | Microarray Suite 5.0 software provided by Affymetrix was used for data acquisitionFollowing data acquisition, the scanned images were quantified according to the Affymetrix GeneChip Manual by using the Data Mining Tool (DMT) 2.0, and Microarray Database software.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jens,,Neumann
| | Sample_contact_email | jens.neumann@med.uni-muenchen.de
| | Sample_contact_phone | 0049-89-2180-73634
| | Sample_contact_fax | 0049-89-2180-73671
| | Sample_contact_department | Institute of Pathology
| | Sample_contact_institute | Ludwig-Maximilians-Universität München
| | Sample_contact_address | Thalkirchner Straße 36
| | Sample_contact_city | Munich
| | Sample_contact_zip/postal_code | 80337
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.pathologie.med.uni-muenchen.de/index.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435884/suppl/GSM435884.CEL.gz
| | Sample_series_id | GSE17475
| | Sample_data_row_count | 22283
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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