Search results for the GEO ID: GSE17476  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM435885 | GPL570 |
|
E161K heart, technical replicate A Mas5
|
left ventricle patient with E161K LMNA mutation
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA E161K
data analysis algorithm: Mas5
|
Gene expression data from left ventricle of human heart with E161K LMNA mutation
|
| Sample_geo_accession | GSM435885
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435885/suppl/GSM435885_E_161K_DCM-A.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
| | |
|
GSM435886 | GPL570 |
|
E161K heart, technical replicate B Mas5
|
left ventricle patient with E161K LMNA mutation
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA E161K
data analysis algorithm: Mas5
|
Gene expression data from left ventricle of human heart with E161K LMNA mutation
|
| Sample_geo_accession | GSM435886
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435886/suppl/GSM435886_E_161K_DCM-B.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
| | |
|
GSM435887 | GPL570 |
|
ISC Control heart, technical replicate A Mas5
|
left ventricle patient with ischemic cardiomyopathy
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA wt
data analysis algorithm: Mas5
|
Gene expression data from left ventricle of human heart with no LMNA mutation
|
| Sample_geo_accession | GSM435887
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435887/suppl/GSM435887_ISC_Cntl-A.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
| | |
|
GSM435888 | GPL570 |
|
ISC Control heart, technical replicate B Mas5
|
left ventricle patient with ischemic cardiomyopathy
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA wt
data analysis algorithm: Mas5
|
Gene expression data from left ventricle of human heart with no LMNA mutation
|
| Sample_geo_accession | GSM435888
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435888/suppl/GSM435888_ISC_Cntl-B.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
| | |
|
GSM435889 | GPL570 |
|
E161K heart, technical replicate A RMA
|
left ventricle patient with E161K LMNA mutation
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA E161K
data analysis algorithm: RMA
|
Gene expression data from left ventricle of human heart with E161K LMNA mutation
|
| Sample_geo_accession | GSM435889
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435889/suppl/GSM435889_E_161K_DCM-A.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
| | |
|
GSM435890 | GPL570 |
|
E161K heart, technical replicate B RMA
|
left ventricle patient with E161K LMNA mutation
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA E161K
data analysis algorithm: RMA
|
Gene expression data from left ventricle of human heart with E161K LMNA mutation
|
| Sample_geo_accession | GSM435890
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435890/suppl/GSM435890_E_161K_DCM-B.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
| | |
|
GSM435891 | GPL570 |
|
ISC Control heart, technical replicate A RMA
|
left ventricle patient with ischemic cardiomyopathy
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA wt
data analysis algorithm: RMA
|
Gene expression data from left ventricle of human heart with no LMNA mutation
|
| Sample_geo_accession | GSM435891
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435891/suppl/GSM435891_ISC_Cntl-A.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
| | |
|
GSM435892 | GPL570 |
|
ISC Control heart, technical replicate B RMA
|
left ventricle patient with ischemic cardiomyopathy
|
gender: male
developmental stage: adult
organ: heart
tissue: left ventricle
genotype: LMNA wt
data analysis algorithm: RMA
|
Gene expression data from left ventricle of human heart with no LMNA mutation
|
| Sample_geo_accession | GSM435892
| | Sample_status | Public on Jan 30 2010
| | Sample_submission_date | Aug 03 2009
| | Sample_last_update_date | Aug 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was synthesized from 10 µg of total RNA using the Superscript Choice System (Invitrogen) and labeled using the BioArray High Yield RNA Transcript Labeling kit (Enzo Diagnostics).
| | Sample_hyb_protocol | cDNA was hybridized to the Affymetrix Human Genome U133 Plus 2.0 Array. Microarrays were washed, stained, and scanned according to standard procedures.
| | Sample_scan_protocol | Standard Affymetrix protocols were used.
| | Sample_data_processing | Robust Microarray Analysis (RMA) and Affymetrix Microarray Suite 5.0 (Mas5) background correction and normalization were applied independently to the raw data sets using the Bioconductor open source software. RankProducts (RP) was used to rank the probesets by fold change.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,K,Mewborn
| | Sample_contact_email | skmewbor@uchicago.edu
| | Sample_contact_phone | 773 702 2684
| | Sample_contact_laboratory | McNally
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S Maryland Ave
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM435nnn/GSM435892/suppl/GSM435892_ISC_Cntl-B.CEL.gz
| | Sample_series_id | GSE17476
| | Sample_data_row_count | 54675
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