Search results for the GEO ID: GSE17625  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM440049 | GPL570 |
|
Caco-2, coculture_0h
|
14 day old Caco-2 cells
|
cell line: Caco-2
time point: 0h
|
No additional information
|
| Sample_geo_accession | GSM440049
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Aug 13 2009
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440049/suppl/GSM440049.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440049/suppl/GSM440049.CHP.gz
| | Sample_series_id | GSE17625
| | Sample_data_row_count | 54675
| | |
|
GSM440050 | GPL570 |
|
Caco-2, coculture_1h
|
14 day old Caco-2 cells
|
cell line: Caco-2
time point: 1h
|
No additional information
|
| Sample_geo_accession | GSM440050
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Aug 13 2009
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440050/suppl/GSM440050.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440050/suppl/GSM440050.CHP.gz
| | Sample_series_id | GSE17625
| | Sample_data_row_count | 54675
| | |
|
GSM440051 | GPL570 |
|
Caco-2, coculture_3h
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14 day old Caco-2 cells
|
cell line: Caco-2
time point: 3h
|
No additional information
|
| Sample_geo_accession | GSM440051
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Aug 13 2009
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440051/suppl/GSM440051.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440051/suppl/GSM440051.CHP.gz
| | Sample_series_id | GSE17625
| | Sample_data_row_count | 54675
| | |
|
GSM440052 | GPL570 |
|
Caco-2, coculture_6h
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14 day old Caco-2 cells
|
cell line: Caco-2
time point: 6h
|
No additional information
|
| Sample_geo_accession | GSM440052
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Aug 13 2009
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440052/suppl/GSM440052.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440052/suppl/GSM440052.CHP.gz
| | Sample_series_id | GSE17625
| | Sample_data_row_count | 54675
| | |
|
GSM440053 | GPL570 |
|
Caco-2, coculture_24h
|
14 day old Caco-2 cells
|
cell line: Caco-2
time point: 24h
|
No additional information
|
| Sample_geo_accession | GSM440053
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Aug 13 2009
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440053/suppl/GSM440053.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440053/suppl/GSM440053.CHP.gz
| | Sample_series_id | GSE17625
| | Sample_data_row_count | 54675
| | |
|
GSM440054 | GPL570 |
|
Caco-2, coculture_48h
|
14 day old Caco-2 cells
|
cell line: Caco-2
time point: 48h
|
No additional information
|
| Sample_geo_accession | GSM440054
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Aug 13 2009
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440054/suppl/GSM440054.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM440nnn/GSM440054/suppl/GSM440054.CHP.gz
| | Sample_series_id | GSE17625
| | Sample_data_row_count | 54675
| | |
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