Search results for the GEO ID: GSE17718  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM442218 | GPL570 |
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postmitotic CD4 T cells, biological rep1
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CD4 T cells, magnetic bead-separated, postmitotic
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cell type: primary CD4 T cells
htlv infection: negative
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Gene expression data from postmitotic CD4 T cells.
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| Sample_geo_accession | GSM442218
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Aug 19 2009
| | Sample_last_update_date | Aug 19 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Primary CD4 T cells were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin, 20U/ml IL-2 after initial stimulation with PHA-P (2µg/ml, 24hours); StEd were kept in RPMI 1640M with 50% Panserin, 20% FCS, 0.35g/l glutamine, streptomycin, 40U/ml IL-2; MT-2 were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen Rneasy Kit and QIAshredder columns according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Standard Affymterix protocol
| | Sample_scan_protocol | Standard Affymterix protocol
| | Sample_data_processing | GeneChip Operating Software (GCOS) and MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ralph,,Grassmann
| | Sample_contact_department | Institute of Clinical and Molecular Virology
| | Sample_contact_institute | Universität Erlangen Nürnberg
| | Sample_contact_address | Schlossgarten 4
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442218/suppl/GSM442218.CEL.gz
| | Sample_series_id | GSE17718
| | Sample_data_row_count | 54675
| | |
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GSM442219 | GPL570 |
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postmitotic CD4 T cells, biological rep2
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CD4 T cells, magnetic bead-separated, postmitotic
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cell type: primary CD4 T cells
htlv infection: negative
|
Gene expression data from postmitotic CD4 T cells.
|
| Sample_geo_accession | GSM442219
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Aug 19 2009
| | Sample_last_update_date | Aug 19 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Primary CD4 T cells were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin, 20U/ml IL-2 after initial stimulation with PHA-P (2µg/ml, 24hours); StEd were kept in RPMI 1640M with 50% Panserin, 20% FCS, 0.35g/l glutamine, streptomycin, 40U/ml IL-2; MT-2 were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen Rneasy Kit and QIAshredder columns according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Standard Affymterix protocol
| | Sample_scan_protocol | Standard Affymterix protocol
| | Sample_data_processing | GeneChip Operating Software (GCOS) and MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ralph,,Grassmann
| | Sample_contact_department | Institute of Clinical and Molecular Virology
| | Sample_contact_institute | Universität Erlangen Nürnberg
| | Sample_contact_address | Schlossgarten 4
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442219/suppl/GSM442219.CEL.gz
| | Sample_series_id | GSE17718
| | Sample_data_row_count | 54675
| | |
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GSM442220 | GPL570 |
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HTLV-1 positive, ATL-derived cell line StEd, biological rep1
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CD4 positive, HTLV-1 positive T cell line, established from adult T cell leukemia (ATL) patient material
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cell type: CD4 T cell line (ATLL-derived)
htlv infection: positive
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Gene expression data from HTLV-1 positive, ATL-derived cell line StEd.
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| Sample_geo_accession | GSM442220
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Aug 19 2009
| | Sample_last_update_date | Aug 19 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Primary CD4 T cells were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin, 20U/ml IL-2 after initial stimulation with PHA-P (2µg/ml, 24hours); StEd were kept in RPMI 1640M with 50% Panserin, 20% FCS, 0.35g/l glutamine, streptomycin, 40U/ml IL-2; MT-2 were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen Rneasy Kit and QIAshredder columns according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Standard Affymterix protocol
| | Sample_scan_protocol | Standard Affymterix protocol
| | Sample_data_processing | GeneChip Operating Software (GCOS) and MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ralph,,Grassmann
| | Sample_contact_department | Institute of Clinical and Molecular Virology
| | Sample_contact_institute | Universität Erlangen Nürnberg
| | Sample_contact_address | Schlossgarten 4
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442220/suppl/GSM442220.CEL.gz
| | Sample_series_id | GSE17718
| | Sample_data_row_count | 54675
| | |
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GSM442221 | GPL570 |
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HTLV-1 positive, ATL-derived cell line StEd, biological rep2
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CD4 positive, HTLV-1 positive T cell line, established from adult T cell leukemia (ATL) patient material
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cell type: CD4 T cell line (ATLL-derived)
htlv infection: positive
|
Gene expression data from HTLV-1 positive, ATL-derived cell line StEd.
|
| Sample_geo_accession | GSM442221
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Aug 19 2009
| | Sample_last_update_date | Aug 19 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Primary CD4 T cells were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin, 20U/ml IL-2 after initial stimulation with PHA-P (2µg/ml, 24hours); StEd were kept in RPMI 1640M with 50% Panserin, 20% FCS, 0.35g/l glutamine, streptomycin, 40U/ml IL-2; MT-2 were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen Rneasy Kit and QIAshredder columns according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Standard Affymterix protocol
| | Sample_scan_protocol | Standard Affymterix protocol
| | Sample_data_processing | GeneChip Operating Software (GCOS) and MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ralph,,Grassmann
| | Sample_contact_department | Institute of Clinical and Molecular Virology
| | Sample_contact_institute | Universität Erlangen Nürnberg
| | Sample_contact_address | Schlossgarten 4
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442221/suppl/GSM442221.CEL.gz
| | Sample_series_id | GSE17718
| | Sample_data_row_count | 54675
| | |
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GSM442222 | GPL570 |
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HTLV-1 positive, in vitro transformed cell line MT-2, biological rep1
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CD4 positive, HTLV-1 positive T cell line, in vitro transformed by HTLV-1
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cell type: CD4 T cell line (in vitro transformed)
htlv infection: positive
|
Gene expression data from HTLV-1 positive, in vitro transformed cell line MT-2.
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| Sample_geo_accession | GSM442222
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Aug 19 2009
| | Sample_last_update_date | Aug 19 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Primary CD4 T cells were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin, 20U/ml IL-2 after initial stimulation with PHA-P (2µg/ml, 24hours); StEd were kept in RPMI 1640M with 50% Panserin, 20% FCS, 0.35g/l glutamine, streptomycin, 40U/ml IL-2; MT-2 were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen Rneasy Kit and QIAshredder columns according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Standard Affymterix protocol
| | Sample_scan_protocol | Standard Affymterix protocol
| | Sample_data_processing | GeneChip Operating Software (GCOS) and MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ralph,,Grassmann
| | Sample_contact_department | Institute of Clinical and Molecular Virology
| | Sample_contact_institute | Universität Erlangen Nürnberg
| | Sample_contact_address | Schlossgarten 4
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442222/suppl/GSM442222.CEL.gz
| | Sample_series_id | GSE17718
| | Sample_data_row_count | 54675
| | |
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GSM442223 | GPL570 |
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HTLV-1 positive, in vitro transformed cell line MT-2, biological rep2
|
CD4 positive, HTLV-1 positive T cell line, in vitro transformed by HTLV-2
|
cell type: CD4 T cell line (in vitro transformed)
htlv infection: positive
|
Gene expression data from HTLV-1 positive, in vitro transformed cell line MT-2.
|
| Sample_geo_accession | GSM442223
| | Sample_status | Public on Aug 20 2009
| | Sample_submission_date | Aug 19 2009
| | Sample_last_update_date | Aug 19 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | none
| | Sample_growth_protocol_ch1 | Primary CD4 T cells were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin, 20U/ml IL-2 after initial stimulation with PHA-P (2µg/ml, 24hours); StEd were kept in RPMI 1640M with 50% Panserin, 20% FCS, 0.35g/l glutamine, streptomycin, 40U/ml IL-2; MT-2 were kept in RPMI 1640M with 10% FCS, 0.35g/l glutamine, streptomycin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using the Qiagen Rneasy Kit and QIAshredder columns according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Standard Affymterix protocol
| | Sample_scan_protocol | Standard Affymterix protocol
| | Sample_data_processing | GeneChip Operating Software (GCOS) and MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ralph,,Grassmann
| | Sample_contact_department | Institute of Clinical and Molecular Virology
| | Sample_contact_institute | Universität Erlangen Nürnberg
| | Sample_contact_address | Schlossgarten 4
| | Sample_contact_city | Erlangen
| | Sample_contact_zip/postal_code | 91054
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442223/suppl/GSM442223.CEL.gz
| | Sample_series_id | GSE17718
| | Sample_data_row_count | 54675
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