Search results for the GEO ID: GSE17844  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM445704 | GPL1261 |
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Hippocampus wild type rep1
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Hippocampus, wild type
|
genotype: Wild Type
tissue: Hippocampus
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Gene expression data from hippocampus cells (wild type)
|
| Sample_geo_accession | GSM445704
| | Sample_status | Public on Apr 25 2012
| | Sample_submission_date | Aug 27 2009
| | Sample_last_update_date | Apr 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Experiments were performed in adult male mice from two daDREAM transgenic lines, L1 and L26, homozygous for the transgene, and wild type littermates. The genetic background in all cases was C57B6xCBA.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using TRIzol (Invitrogen) and the RNeasy Mini Kit (Qiagen). RNA was quantified and the RNA quality was assessed with a 2100 Bioanalyzer from Agilent Technologies
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 µg of biotinylated cRNA were hybridized to Affymetrix chips (GeneChip Mouse Genome 430 2.0 Array). Each sample was added to a hybridization solution containing 100mM 2-(N-morpholino)ethanesulfonic acid, 1 M Na+, and 20mM of EDT
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GeneChip intensities were background-corrected, normalized and sumarized by RMA method, using the “Affy” package from Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juan,Carlos,Oliveros
| | Sample_contact_institute | CNB, CSIC
| | Sample_contact_address | Darwin 3
| | Sample_contact_city | Cantoblanco
| | Sample_contact_state | Madrid
| | Sample_contact_zip/postal_code | 28049
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM445nnn/GSM445704/suppl/GSM445704.CEL.gz
| | Sample_series_id | GSE17844
| | Sample_data_row_count | 45101
| | |
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GSM445705 | GPL1261 |
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Hippocampus wild type rep2
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Hippocampus, wild type
|
genotype: Wild Type
tissue: Hippocampus
|
Gene expression data from hippocampus cells (wild type)
|
| Sample_geo_accession | GSM445705
| | Sample_status | Public on Apr 25 2012
| | Sample_submission_date | Aug 27 2009
| | Sample_last_update_date | Apr 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Experiments were performed in adult male mice from two daDREAM transgenic lines, L1 and L26, homozygous for the transgene, and wild type littermates. The genetic background in all cases was C57B6xCBA.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using TRIzol (Invitrogen) and the RNeasy Mini Kit (Qiagen). RNA was quantified and the RNA quality was assessed with a 2100 Bioanalyzer from Agilent Technologies
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 µg of biotinylated cRNA were hybridized to Affymetrix chips (GeneChip Mouse Genome 430 2.0 Array). Each sample was added to a hybridization solution containing 100mM 2-(N-morpholino)ethanesulfonic acid, 1 M Na+, and 20mM of EDT
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GeneChip intensities were background-corrected, normalized and sumarized by RMA method, using the “Affy” package from Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juan,Carlos,Oliveros
| | Sample_contact_institute | CNB, CSIC
| | Sample_contact_address | Darwin 3
| | Sample_contact_city | Cantoblanco
| | Sample_contact_state | Madrid
| | Sample_contact_zip/postal_code | 28049
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM445nnn/GSM445705/suppl/GSM445705.CEL.gz
| | Sample_series_id | GSE17844
| | Sample_data_row_count | 45101
| | |
|
GSM445706 | GPL1261 |
|
Hippocampus wild type rep3
|
Hippocampus, wild type
|
genotype: Wild Type
tissue: Hippocampus
|
Gene expression data from hippocampus cells (wild type)
|
| Sample_geo_accession | GSM445706
| | Sample_status | Public on Apr 25 2012
| | Sample_submission_date | Aug 27 2009
| | Sample_last_update_date | Apr 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Experiments were performed in adult male mice from two daDREAM transgenic lines, L1 and L26, homozygous for the transgene, and wild type littermates. The genetic background in all cases was C57B6xCBA.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using TRIzol (Invitrogen) and the RNeasy Mini Kit (Qiagen). RNA was quantified and the RNA quality was assessed with a 2100 Bioanalyzer from Agilent Technologies
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 µg of biotinylated cRNA were hybridized to Affymetrix chips (GeneChip Mouse Genome 430 2.0 Array). Each sample was added to a hybridization solution containing 100mM 2-(N-morpholino)ethanesulfonic acid, 1 M Na+, and 20mM of EDT
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GeneChip intensities were background-corrected, normalized and sumarized by RMA method, using the “Affy” package from Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juan,Carlos,Oliveros
| | Sample_contact_institute | CNB, CSIC
| | Sample_contact_address | Darwin 3
| | Sample_contact_city | Cantoblanco
| | Sample_contact_state | Madrid
| | Sample_contact_zip/postal_code | 28049
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM445nnn/GSM445706/suppl/GSM445706.CEL.gz
| | Sample_series_id | GSE17844
| | Sample_data_row_count | 45101
| | |
|
GSM445707 | GPL1261 |
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Hippocampus L26 rep1
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Hippocampus, L26
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genotype: L26 daDREAM transgenic line
tissue: Hippocampus
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Gene expression data from hippocampus cells (L26)
|
| Sample_geo_accession | GSM445707
| | Sample_status | Public on Apr 25 2012
| | Sample_submission_date | Aug 27 2009
| | Sample_last_update_date | Apr 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Experiments were performed in adult male mice from two daDREAM transgenic lines, L1 and L26, homozygous for the transgene, and wild type littermates. The genetic background in all cases was C57B6xCBA.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using TRIzol (Invitrogen) and the RNeasy Mini Kit (Qiagen). RNA was quantified and the RNA quality was assessed with a 2100 Bioanalyzer from Agilent Technologies
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 µg of biotinylated cRNA were hybridized to Affymetrix chips (GeneChip Mouse Genome 430 2.0 Array). Each sample was added to a hybridization solution containing 100mM 2-(N-morpholino)ethanesulfonic acid, 1 M Na+, and 20mM of EDT
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GeneChip intensities were background-corrected, normalized and sumarized by RMA method, using the “Affy” package from Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juan,Carlos,Oliveros
| | Sample_contact_institute | CNB, CSIC
| | Sample_contact_address | Darwin 3
| | Sample_contact_city | Cantoblanco
| | Sample_contact_state | Madrid
| | Sample_contact_zip/postal_code | 28049
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM445nnn/GSM445707/suppl/GSM445707.CEL.gz
| | Sample_series_id | GSE17844
| | Sample_data_row_count | 45101
| | |
|
GSM445708 | GPL1261 |
|
Hippocampus L26 rep2
|
Hippocampus, L26
|
genotype: L26 daDREAM transgenic line
tissue: Hippocampus
|
Gene expression data from hippocampus cells (L26)
|
| Sample_geo_accession | GSM445708
| | Sample_status | Public on Apr 25 2012
| | Sample_submission_date | Aug 27 2009
| | Sample_last_update_date | Apr 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Experiments were performed in adult male mice from two daDREAM transgenic lines, L1 and L26, homozygous for the transgene, and wild type littermates. The genetic background in all cases was C57B6xCBA.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using TRIzol (Invitrogen) and the RNeasy Mini Kit (Qiagen). RNA was quantified and the RNA quality was assessed with a 2100 Bioanalyzer from Agilent Technologies
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 µg of biotinylated cRNA were hybridized to Affymetrix chips (GeneChip Mouse Genome 430 2.0 Array). Each sample was added to a hybridization solution containing 100mM 2-(N-morpholino)ethanesulfonic acid, 1 M Na+, and 20mM of EDT
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GeneChip intensities were background-corrected, normalized and sumarized by RMA method, using the “Affy” package from Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juan,Carlos,Oliveros
| | Sample_contact_institute | CNB, CSIC
| | Sample_contact_address | Darwin 3
| | Sample_contact_city | Cantoblanco
| | Sample_contact_state | Madrid
| | Sample_contact_zip/postal_code | 28049
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM445nnn/GSM445708/suppl/GSM445708.CEL.gz
| | Sample_series_id | GSE17844
| | Sample_data_row_count | 45101
| | |
|
GSM445709 | GPL1261 |
|
Hippocampus L26 rep3
|
Hippocampus, L26
|
genotype: L26 daDREAM transgenic line
tissue: Hippocampus
|
Gene expression data from hippocampus cells (L26)
|
| Sample_geo_accession | GSM445709
| | Sample_status | Public on Apr 25 2012
| | Sample_submission_date | Aug 27 2009
| | Sample_last_update_date | Apr 25 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Experiments were performed in adult male mice from two daDREAM transgenic lines, L1 and L26, homozygous for the transgene, and wild type littermates. The genetic background in all cases was C57B6xCBA.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using TRIzol (Invitrogen) and the RNeasy Mini Kit (Qiagen). RNA was quantified and the RNA quality was assessed with a 2100 Bioanalyzer from Agilent Technologies
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 4 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 µg of biotinylated cRNA were hybridized to Affymetrix chips (GeneChip Mouse Genome 430 2.0 Array). Each sample was added to a hybridization solution containing 100mM 2-(N-morpholino)ethanesulfonic acid, 1 M Na+, and 20mM of EDT
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GeneChip intensities were background-corrected, normalized and sumarized by RMA method, using the “Affy” package from Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Juan,Carlos,Oliveros
| | Sample_contact_institute | CNB, CSIC
| | Sample_contact_address | Darwin 3
| | Sample_contact_city | Cantoblanco
| | Sample_contact_state | Madrid
| | Sample_contact_zip/postal_code | 28049
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM445nnn/GSM445709/suppl/GSM445709.CEL.gz
| | Sample_series_id | GSE17844
| | Sample_data_row_count | 45101
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