Search results for the GEO ID: GSE17861 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM442670 | GPL570 |
|
Patient 4285557, renal graft bx Z01, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 4285557
sex: female
age of patient: 53
serum creatinine: 107 microMol/L
renal graft bx: Z01
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442670
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442670/suppl/GSM442670.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442670/suppl/GSM442670.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442671 | GPL570 |
|
Patient 7409460, renal graft bx Z02, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 7409460
sex: female
age of patient: 52
serum creatinine: n.d. Renal graft bx: Z02
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442671
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442671/suppl/GSM442671.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442671/suppl/GSM442671.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442672 | GPL570 |
|
Patient 7668988, renal graft bx Z05, diagnosis borderline changes
|
Biopsy with borderline rejection / suspicious changes from human kidney allograft
|
patient identifier: 652033
sex: male
age of patient: 47
serum creatinine: 94 microMol/L
renal graft bx: Z05
banff'97: borderline changes
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of borderline changes
|
Sample_geo_accession | GSM442672
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442672/suppl/GSM442672.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442672/suppl/GSM442672.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442673 | GPL570 |
|
Patient 525928, renal graft bx Z06, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 525928
sex: male
age of patient: 53
serum creatinine: 167 microMol/L
renal graft bx: Z06
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442673
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442673/suppl/GSM442673.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442673/suppl/GSM442673.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442674 | GPL570 |
|
Patient 525928, renal graft bx Z07, diagnosis AR IB, IIA
|
Acute rejection biopsy grade Ib, IIA from human transplanted kidney
|
patient identifier: 525928
sex: male
age of patient: 53
serum creatinine: 163 microMol/L
renal graft bx: Z07
banff'97: AR IB, IIA
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of acute rejection IB, IIA
|
Sample_geo_accession | GSM442674
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442674/suppl/GSM442674.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442674/suppl/GSM442674.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442675 | GPL570 |
|
Patient 718181, renal graft bx Z10, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 718181
sex: male
age of patient: 45
serum creatinine: 95 microMol/L
renal graft bx: Z10
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442675
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442675/suppl/GSM442675.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442675/suppl/GSM442675.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442676 | GPL570 |
|
Patient 718181, renal graft bx Z11, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 718181
sex: male
age of patient: 45
serum creatinine: 106 microMol/L
renal graft bx: Z11
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442676
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442676/suppl/GSM442676.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442676/suppl/GSM442676.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442677 | GPL570 |
|
Patient 7358285, renal graft bx Z13, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 7358285
sex: male
age of patient: 30
serum creatinine: 159 microMol/L
renal graft bx: Z13
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442677
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442677/suppl/GSM442677.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442677/suppl/GSM442677.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442678 | GPL570 |
|
Patient 7974116, renal graft bx Z14, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 7974116
sex: female
age of patient: 64
serum creatinine: 115 microMol/L
renal graft bx: Z14
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442678
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442678/suppl/GSM442678.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442678/suppl/GSM442678.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442679 | GPL570 |
|
Patient 7974116, renal graft bx Z15, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 7974116
sex: female
age of patient: 64
serum creatinine: 114 microMol/L
renal graft bx: Z15
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442679
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442679/suppl/GSM442679.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442679/suppl/GSM442679.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442680 | GPL570 |
|
Patient 2727137, renal graft bx Z16, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 2727137
sex: male
age of patient: 53
serum creatinine: 117 microMol/L
renal graft bx: Z16
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442680
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442680/suppl/GSM442680.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442680/suppl/GSM442680.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442681 | GPL570 |
|
Patient 4260341, renal graft bx Z17, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 4260341
sex: male
age of patient: 29
serum creatinine: 152 microMol/L
renal graft bx: Z17
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442681
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442681/suppl/GSM442681.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442681/suppl/GSM442681.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442682 | GPL570 |
|
Patient 4260341, renal graft bx Z18, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 4260341
sex: male
age of patient: 29
serum creatinine: 108 microMol/L
renal graft bx: Z18
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442682
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442682/suppl/GSM442682.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442682/suppl/GSM442682.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442683 | GPL570 |
|
Patient 4138406, renal graft bx Z19, diagnosis AR IIA
|
Acute rejection biopsy grade IIB from human transplanted kidney
|
patient identifier: 4138406
sex: male
age of patient: 59
serum creatinine: 144 microMol/L
renal graft bx: Z19
banff'97: AR IIA
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of acute rejection IIA
|
Sample_geo_accession | GSM442683
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442683/suppl/GSM442683.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442683/suppl/GSM442683.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442684 | GPL570 |
|
Patient 7409460, renal graft bx Z20, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 7409460
sex: female
age of patient: 52
serum creatinine: n.d. microMol/L
renal graft bx: Z20
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442684
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442684/suppl/GSM442684.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442684/suppl/GSM442684.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
GSM442685 | GPL570 |
|
Patient 6836879, renal graft bx Z21, diagnosis non-rejecting
|
Biopsy from non-rejecting human transplanted kidney
|
patient identifier: 6836879
sex: female
age of patient: 30
serum creatinine: 94 microMol/L
renal graft bx: Z21
banff'97: non-rejecting
|
Gene expression data from core human renal allograft biopsy (16 gauge) with histological diagnosis of no rejection
|
Sample_geo_accession | GSM442685
| Sample_status | Public on Aug 22 2009
| Sample_submission_date | Aug 20 2009
| Sample_last_update_date | Aug 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions (Qiagen, Hilden, Germany).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled probes were prepared either according to the Affymetrix 2-cycle cDNA amplification protocol (Affymetrix, Santa Clara, CA) from 50 ng total RNA of all biopsy samples, or from 5 microg of total RNA of all control kidney samples according to the standard Affymetrix protocol. The cDNA was transcribed in vitro in the presence of biotinylated ribonucleotides (Bioarray high-yield T7 DNA transcription kit; ENZO Life Sciences, Inc.). The biotinylated cRNA was purified on an affinity resin (RNeasy; Qiagen), quantified, and fragmented into strands of 50–200 nucleotides in length.
| Sample_hyb_protocol | Hybridization of arrays was carried out at 45°C for about18 h, then arrays were stained on a GeneChip Fluidics Workstation 450 according to the manufacturer’s technical manual (Affymetrix).
| Sample_scan_protocol | GeneChips were scanned on a GeneArray Scanner 3000 according to the manufacturer’s technical manual (Affymetrix).
| Sample_data_processing | The data were analyzed using global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Andreas,,Scherer
| Sample_contact_email | Andreas.Scherer@Spheromics.com
| Sample_contact_institute | Spheromics
| Sample_contact_address | Pajutie 3A
| Sample_contact_city | Kontiolahti
| Sample_contact_zip/postal_code | 81100
| Sample_contact_country | Finland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442685/suppl/GSM442685.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM442nnn/GSM442685/suppl/GSM442685.CHP.gz
| Sample_series_id | GSE9493
| Sample_series_id | GSE17861
| Sample_data_row_count | 54675
| |
|
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Select GSMs and click on "Add groups" |
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