Search results for the GEO ID: GSE17879  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM446645 | GPL1261 |
|
control ES cells #1
|
ES cells in defined media
|
cell line: E14Tg2a
cell type: mouse embryonic stem cells
developmental stage: E14
condition: untreated
|
control 2
|
| Sample_geo_accession | GSM446645
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Aug 30 2009
| | Sample_last_update_date | Aug 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated, 10ng/ml activin for 2 hrs, or 5uM SB431542 for 24 hrs.
| | Sample_growth_protocol_ch1 | Defined ES cell media (N2B27) supplemented with BMP4 (20ng/ml) and LIF (10^3U/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; RMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM446nnn/GSM446645/suppl/GSM446645.CEL.gz
| | Sample_series_id | GSE17879
| | Sample_data_row_count | 45101
| | |
|
GSM446646 | GPL1261 |
|
control ES cells #2
|
ES cells in defined media
|
cell line: E14Tg2a
cell type: mouse embryonic stem cells
developmental stage: E14
condition: untreated
|
control 3
|
| Sample_geo_accession | GSM446646
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Aug 30 2009
| | Sample_last_update_date | Aug 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated, 10ng/ml activin for 2 hrs, or 5uM SB431542 for 24 hrs.
| | Sample_growth_protocol_ch1 | Defined ES cell media (N2B27) supplemented with BMP4 (20ng/ml) and LIF (10^3U/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; RMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM446nnn/GSM446646/suppl/GSM446646.CEL.gz
| | Sample_series_id | GSE17879
| | Sample_data_row_count | 45101
| | |
|
GSM446647 | GPL1261 |
|
activin-treated ES cells #1
|
ES cells in defined media + activin 10ng/ml, 2 hrs
|
cell line: E14Tg2a
cell type: mouse embryonic stem cells
developmental stage: E14
condition: activin
|
activin 4
|
| Sample_geo_accession | GSM446647
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Aug 30 2009
| | Sample_last_update_date | Aug 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated, 10ng/ml activin for 2 hrs, or 5uM SB431542 for 24 hrs.
| | Sample_growth_protocol_ch1 | Defined ES cell media (N2B27) supplemented with BMP4 (20ng/ml) and LIF (10^3U/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; RMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM446nnn/GSM446647/suppl/GSM446647.CEL.gz
| | Sample_series_id | GSE17879
| | Sample_data_row_count | 45101
| | |
|
GSM446648 | GPL1261 |
|
activin-treated ES cells #2
|
ES cells in defined media + activin 10ng/ml, 2 hrs
|
cell line: E14Tg2a
cell type: mouse embryonic stem cells
developmental stage: E14
condition: activin
|
activin 6
|
| Sample_geo_accession | GSM446648
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Aug 30 2009
| | Sample_last_update_date | Aug 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated, 10ng/ml activin for 2 hrs, or 5uM SB431542 for 24 hrs.
| | Sample_growth_protocol_ch1 | Defined ES cell media (N2B27) supplemented with BMP4 (20ng/ml) and LIF (10^3U/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; RMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM446nnn/GSM446648/suppl/GSM446648.CEL.gz
| | Sample_series_id | GSE17879
| | Sample_data_row_count | 45101
| | |
|
GSM446649 | GPL1261 |
|
SB431542-treated ES cells #1
|
ES cells in defined media + SB431542 5uM, 24 hrs
|
cell line: E14Tg2a
cell type: mouse embryonic stem cells
developmental stage: E14
condition: SB432542
|
SB 8
|
| Sample_geo_accession | GSM446649
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Aug 30 2009
| | Sample_last_update_date | Aug 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated, 10ng/ml activin for 2 hrs, or 5uM SB431542 for 24 hrs.
| | Sample_growth_protocol_ch1 | Defined ES cell media (N2B27) supplemented with BMP4 (20ng/ml) and LIF (10^3U/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; RMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM446nnn/GSM446649/suppl/GSM446649.CEL.gz
| | Sample_series_id | GSE17879
| | Sample_data_row_count | 45101
| | |
|
GSM446650 | GPL1261 |
|
SB432542-treated ES cells #2
|
ES cells in defined media + SB431542 5uM, 24 hrs
|
cell line: E14Tg2a
cell type: mouse embryonic stem cells
developmental stage: E14
condition: SB432542
|
SB 9
|
| Sample_geo_accession | GSM446650
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Aug 30 2009
| | Sample_last_update_date | Aug 30 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated, 10ng/ml activin for 2 hrs, or 5uM SB431542 for 24 hrs.
| | Sample_growth_protocol_ch1 | Defined ES cell media (N2B27) supplemented with BMP4 (20ng/ml) and LIF (10^3U/ml).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy RNA purification.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Oligo-dT first-strand synthesis, biotin labelled via in vitro transcription.
| | Sample_hyb_protocol | Per standard Affymetrix protocol.
| | Sample_scan_protocol | Automated process conducted using the Agilent GeneArray Scanner.
| | Sample_data_processing | Bioconductor package in R; RMA normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jay,,Vivian
| | Sample_contact_email | jvivian@kumc.edu
| | Sample_contact_phone | (913) 588-0341
| | Sample_contact_fax | (913) 588-8287
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Kansas Medical Center
| | Sample_contact_address | 3901 Rainbow Blvd.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | KS
| | Sample_contact_zip/postal_code | 66160
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM446nnn/GSM446650/suppl/GSM446650.CEL.gz
| | Sample_series_id | GSE17879
| | Sample_data_row_count | 45101
| | |
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