Search results for the GEO ID: GSE17906  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM257248 | GPL570 |
|
CD26+ cancer cell, replicate 1
|
prostate tumor Gleason 3
|
tissue: primary prostate tumor
cell type: CD26+ MACS sorted cancer cells
|
Primary tumor prostate cancer cells.
|
| Sample_geo_accession | GSM257248
| | Sample_status | Public on Jan 14 2009
| | Sample_submission_date | Jan 15 2008
| | Sample_last_update_date | Sep 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tumor tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 200 ng of total RNA was processed to produce biotinylated cRNA.
| | Sample_hyb_protocol | standard Affymetrix procedures.
| | Sample_scan_protocol | standard Affymetrix procedures.
| | Sample_data_processing | RMA of .cel files with SBEAMS (https://db.systemsbiology.net/projects/sbeams/)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257248/suppl/GSM257248.CEL.gz
| | Sample_series_id | GSE10183
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM257249 | GPL570 |
|
CD26+ cancer cell, replicate 2
|
prostate tumor Gleason 3
|
tissue: primary prostate tumor
cell type: CD26+ MACS sorted cancer cells
|
Primary tumor prostate cancer cells.
|
| Sample_geo_accession | GSM257249
| | Sample_status | Public on Jan 14 2009
| | Sample_submission_date | Jan 15 2008
| | Sample_last_update_date | Sep 03 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tumor tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 200 ng of total RNA was processed to produce biotinylated cRNA.
| | Sample_hyb_protocol | standard Affymetrix procedures.
| | Sample_scan_protocol | standard Affymetrix procedures.
| | Sample_data_processing | RMA of .cel files with SBEAMS (https://db.systemsbiology.net/projects/sbeams/)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257249/suppl/GSM257249.CEL.gz
| | Sample_series_id | GSE10183
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447155 | GPL570 |
|
CD49a_01-26-04
|
normal prostate
|
tissue: prostate
cell type: CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells.
|
| Sample_geo_accession | GSM447155
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447155/suppl/GSM447155.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447156 | GPL570 |
|
CD49a_03-23-04
|
normal prostate
|
tissue: prostate
cell type: CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells.
|
| Sample_geo_accession | GSM447156
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447156/suppl/GSM447156.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447157 | GPL570 |
|
CD49a_03-04-04
|
normal prostate
|
tissue: prostate
cell type: CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells.
|
| Sample_geo_accession | GSM447157
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447157/suppl/GSM447157.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447158 | GPL570 |
|
CD49a-1_06-02-04
|
normal prostate
|
tissue: prostate
cell type: CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells.
|
| Sample_geo_accession | GSM447158
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447158/suppl/GSM447158.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447159 | GPL570 |
|
CD49a-4_06-02-04
|
normal prostate
|
tissue: prostate
cell type: CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells.
|
| Sample_geo_accession | GSM447159
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447159/suppl/GSM447159.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447160 | GPL570 |
|
05-179_CD26t
|
cancer prostate
|
tissue: prostate
cell type: CD26+ MACS sorted cells
|
Prostate cancer cells.
|
| Sample_geo_accession | GSM447160
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447160/suppl/GSM447160.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447161 | GPL570 |
|
05-206_NP
|
normal prostate
|
tissue: prostate
|
Prostate whole tissue.
|
| Sample_geo_accession | GSM447161
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447161/suppl/GSM447161.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447162 | GPL570 |
|
05-206_CaP
|
cancer prostate
|
tissue: prostate
gleason: 3+3
tumor stage: T2cN0Mx
tumor volume: 4.7 cc
|
Prostate cancer whole tissue.
|
| Sample_geo_accession | GSM447162
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447162/suppl/GSM447162.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447163 | GPL570 |
|
05-213_NP
|
normal prostate
|
tissue: prostate
|
Prostate whole tissue.
|
| Sample_geo_accession | GSM447163
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447163/suppl/GSM447163.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447164 | GPL570 |
|
05-213_CaP
|
cancer prostate
|
tissue: prostate
gleason: 3+4
tumor stage: T2c
tumor volume: 3.4 cc
|
Prostate cancer whole tissue.
|
| Sample_geo_accession | GSM447164
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447164/suppl/GSM447164.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447165 | GPL570 |
|
05-214_NP
|
normal prostate
|
tissue: prostate
|
Prostate whole tissue.
|
| Sample_geo_accession | GSM447165
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447165/suppl/GSM447165.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447166 | GPL570 |
|
05-214_CaP
|
cancer prostate
|
tissue: prostate
gleason: 3+4
tumor stage: T2c
tumor volume: 2.5 cc
|
Prostate cancer whole tissue.
|
| Sample_geo_accession | GSM447166
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447166/suppl/GSM447166.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447167 | GPL570 |
|
05-218_CaP
|
cancer prostate
|
tissue: prostate
gleason: 4+5
tumor stage: T3a
tumor volume: 3 cc
|
Prostate cancer whole tissue.
|
| Sample_geo_accession | GSM447167
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447167/suppl/GSM447167.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447168 | GPL570 |
|
05-218_NP
|
normal prostate
|
tissue: prostate
|
Prostate whole tissue.
|
| Sample_geo_accession | GSM447168
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447168/suppl/GSM447168.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447169 | GPL570 |
|
05-220_CaP
|
cancer prostate
|
tissue: prostate
gleason: 4+5
tumor stage: T3aN1
tumor volume: > 5 cc
|
Prostate cancer whole tissue.
|
| Sample_geo_accession | GSM447169
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447169/suppl/GSM447169.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447170 | GPL570 |
|
05-220_NP
|
normal prostate
|
tissue: prostate
|
Prostate whole tissue.
|
| Sample_geo_accession | GSM447170
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue total RNA was extracted from the specimen using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447170/suppl/GSM447170.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447171 | GPL570 |
|
05-179_CD26t_2
|
cancer prostate
|
tissue: prostate
cell type: CD26+ MACS sorted cells
|
Prostate cancer cells.
|
| Sample_geo_accession | GSM447171
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447171/suppl/GSM447171.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447172 | GPL570 |
|
06-125_NB_CD13posi
|
normal bladder
|
tissue: bladder
cell type: CD13+ MACS sorted cells
|
Bladder stromal fibromuscular cells.
|
| Sample_geo_accession | GSM447172
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Bladder tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447172/suppl/GSM447172.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447173 | GPL570 |
|
06-070_NB_str_CD13posi
|
normal bladder
|
tissue: bladder
cell type: CD13+ MACS sorted cells
|
Bladder stromal fibromuscular cells.
|
| Sample_geo_accession | GSM447173
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Bladder tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447173/suppl/GSM447173.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447174 | GPL570 |
|
07-008_CB_str_CD13posi
|
cancer bladder
|
tissue: bladder
cell type: CD13+ MACS sorted cells
tumor type: high-grade urothelial carcinoma
tumor stage: pT2N0
|
Bladder tumor-associated stromal cells.
|
| Sample_geo_accession | GSM447174
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Bladder tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447174/suppl/GSM447174.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447176 | GPL570 |
|
CP_Str_08-028_CD90posi
|
cancer prostate
|
tissue: prostate
cell type: CD90+ MACS sorted cells
gleason: 3+4
tumor stage: T2c
tumor volume: 2.5 cc
|
Prostate tumor-associated stromal cells.
|
| Sample_geo_accession | GSM447176
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447176/suppl/GSM447176.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447177 | GPL570 |
|
08-032_CP_epi_CD26posi
|
cancer prostate
|
tissue: prostate
cell type: CD26+ MACS sorted cells
gleason: 4+4
tumor stage: T3b
tumor volume: 2.7 cc
|
Prostate cancer cells.
|
| Sample_geo_accession | GSM447177
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447177/suppl/GSM447177.CEL.gz
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
GSM447178 | GPL570 |
|
08-032_CP_strom_CD90posi
|
cancer prostate
|
tissue: prostate
cell type: CD90+ MACS sorted cells
gleason: 4+4
tumor stage: T3b
tumor volume: 2.7 cc
|
Prostate tumor-associated stromal cells.
|
| Sample_geo_accession | GSM447178
| | Sample_status | Public on Sep 09 2009
| | Sample_submission_date | Sep 01 2009
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using Rneasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix IVT labeling protocol. See Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were RMA normalized using R/Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ricardo,Z.N.,Vêncio
| | Sample_contact_laboratory | http://labpib.fmrp.usp.br
| | Sample_contact_department | Genetics, USP Medical School at Ribeirao Preto
| | Sample_contact_institute | Universidade de São Paulo
| | Sample_contact_address | Av. Bandeirantes, 3900
| | Sample_contact_city | Ribeirao Preto
| | Sample_contact_state | SP
| | Sample_contact_zip/postal_code | 14049-900
| | Sample_contact_country | Brazil
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM447nnn/GSM447178/suppl/GSM447178.CEL.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE17906
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
