Search results for the GEO ID: GSE17934  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM448013 | GPL339 |
|
mouse pharyngeal arch_E10.5_WT_rep1
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mouse Second heart field-containing tissue
|
strain: 129P2/OlaHsd backcrossed to C57BL/6 for 2 generations
stage: E10.5
tissue: Second heart field-containing tissue
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WT1_031307_SA_MOE430A_031307
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| Sample_geo_accession | GSM448013
| | Sample_status | Public on May 17 2010
| | Sample_submission_date | Sep 02 2009
| | Sample_last_update_date | May 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were housed in the Medical University of South Carolina animal facility using institutionally approved protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Pharyngeal arch-containing tissue was collected by dissection from wild-type embryos at E10.5. RNA was prepared from individual tissue isolates by Trizol extraction and purification with the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA (10 ng) was converted into biotin-labeled cDNA suitable for hybridization to Affymetrix GeneChips (Affymetrix, Santa Clara, CA) using the WT-Ovation™ Pico amplification kit and the FL-Ovation™ cDNA Biotin V2 kit (NuGen, San Carlos, CA).
| | Sample_hyb_protocol | Samples were hybridized overnight to GeneChips in accordance with Affymetrix protocols.
| | Sample_scan_protocol | Post hybridization washing, staining and fluorescence scanning were performed using Affymetrix instrumentation in accordance with manufacturer recommendations.
| | Sample_data_processing | Scanned GeneChips (CEL files) were processed with Affymetrix GCOS to generate CHP files.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Jeremy,,Barth
| | Sample_contact_email | barthj@musc.edu
| | Sample_contact_institute | MUSC
| | Sample_contact_address | 173 Ashley Ave, BSB 601
| | Sample_contact_city | Charleston
| | Sample_contact_state | SC
| | Sample_contact_zip/postal_code | 29425
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448013/suppl/GSM448013.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448013/suppl/GSM448013.CHP.gz
| | Sample_series_id | GSE17934
| | Sample_series_id | GSE17936
| | Sample_data_row_count | 22690
| | |
|
GSM448014 | GPL339 |
|
mouse pharyngeal arch_E10.5_WT_rep2
|
mouse Second heart field-containing tissue
|
strain: 129P2/OlaHsd backcrossed to C57BL/6 for 2 generations
stage: E10.5
tissue: Second heart field-containing tissue
|
WT2_031307_SA_MOE430A_031307
|
| Sample_geo_accession | GSM448014
| | Sample_status | Public on May 17 2010
| | Sample_submission_date | Sep 02 2009
| | Sample_last_update_date | May 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were housed in the Medical University of South Carolina animal facility using institutionally approved protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Pharyngeal arch-containing tissue was collected by dissection from wild-type embryos at E10.5. RNA was prepared from individual tissue isolates by Trizol extraction and purification with the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA (10 ng) was converted into biotin-labeled cDNA suitable for hybridization to Affymetrix GeneChips (Affymetrix, Santa Clara, CA) using the WT-Ovation™ Pico amplification kit and the FL-Ovation™ cDNA Biotin V2 kit (NuGen, San Carlos, CA).
| | Sample_hyb_protocol | Samples were hybridized overnight to GeneChips in accordance with Affymetrix protocols.
| | Sample_scan_protocol | Post hybridization washing, staining and fluorescence scanning were performed using Affymetrix instrumentation in accordance with manufacturer recommendations.
| | Sample_data_processing | Scanned GeneChips (CEL files) were processed with Affymetrix GCOS to generate CHP files.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Jeremy,,Barth
| | Sample_contact_email | barthj@musc.edu
| | Sample_contact_institute | MUSC
| | Sample_contact_address | 173 Ashley Ave, BSB 601
| | Sample_contact_city | Charleston
| | Sample_contact_state | SC
| | Sample_contact_zip/postal_code | 29425
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448014/suppl/GSM448014.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448014/suppl/GSM448014.CHP.gz
| | Sample_series_id | GSE17934
| | Sample_series_id | GSE17936
| | Sample_data_row_count | 22690
| | |
|
GSM448015 | GPL339 |
|
mouse pharyngeal arch_E10.5_WT_rep3
|
mouse Second heart field-containing tissue
|
strain: 129P2/OlaHsd backcrossed to C57BL/6 for 2 generations
stage: E10.5
tissue: Second heart field-containing tissue
|
WT3_031307_SA_MOE430A_031307
|
| Sample_geo_accession | GSM448015
| | Sample_status | Public on May 17 2010
| | Sample_submission_date | Sep 02 2009
| | Sample_last_update_date | May 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were housed in the Medical University of South Carolina animal facility using institutionally approved protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Pharyngeal arch-containing tissue was collected by dissection from wild-type embryos at E10.5. RNA was prepared from individual tissue isolates by Trizol extraction and purification with the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA (10 ng) was converted into biotin-labeled cDNA suitable for hybridization to Affymetrix GeneChips (Affymetrix, Santa Clara, CA) using the WT-Ovation™ Pico amplification kit and the FL-Ovation™ cDNA Biotin V2 kit (NuGen, San Carlos, CA).
| | Sample_hyb_protocol | Samples were hybridized overnight to GeneChips in accordance with Affymetrix protocols.
| | Sample_scan_protocol | Post hybridization washing, staining and fluorescence scanning were performed using Affymetrix instrumentation in accordance with manufacturer recommendations.
| | Sample_data_processing | Scanned GeneChips (CEL files) were processed with Affymetrix GCOS to generate CHP files.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Jeremy,,Barth
| | Sample_contact_email | barthj@musc.edu
| | Sample_contact_institute | MUSC
| | Sample_contact_address | 173 Ashley Ave, BSB 601
| | Sample_contact_city | Charleston
| | Sample_contact_state | SC
| | Sample_contact_zip/postal_code | 29425
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448015/suppl/GSM448015.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448015/suppl/GSM448015.CHP.gz
| | Sample_series_id | GSE17934
| | Sample_series_id | GSE17936
| | Sample_data_row_count | 22690
| | |
|
GSM448016 | GPL339 |
|
mouse pharyngeal arch_E10.5_WT_rep4
|
mouse Second heart field-containing tissue
|
strain: 129P2/OlaHsd backcrossed to C57BL/6 for 2 generations
stage: E10.5
tissue: Second heart field-containing tissue
|
WT4_031307_SA_MOE430A_031307
|
| Sample_geo_accession | GSM448016
| | Sample_status | Public on May 17 2010
| | Sample_submission_date | Sep 02 2009
| | Sample_last_update_date | May 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were housed in the Medical University of South Carolina animal facility using institutionally approved protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Pharyngeal arch-containing tissue was collected by dissection from wild-type embryos at E10.5. RNA was prepared from individual tissue isolates by Trizol extraction and purification with the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA (10 ng) was converted into biotin-labeled cDNA suitable for hybridization to Affymetrix GeneChips (Affymetrix, Santa Clara, CA) using the WT-Ovation™ Pico amplification kit and the FL-Ovation™ cDNA Biotin V2 kit (NuGen, San Carlos, CA).
| | Sample_hyb_protocol | Samples were hybridized overnight to GeneChips in accordance with Affymetrix protocols.
| | Sample_scan_protocol | Post hybridization washing, staining and fluorescence scanning were performed using Affymetrix instrumentation in accordance with manufacturer recommendations.
| | Sample_data_processing | Scanned GeneChips (CEL files) were processed with Affymetrix GCOS to generate CHP files.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Jeremy,,Barth
| | Sample_contact_email | barthj@musc.edu
| | Sample_contact_institute | MUSC
| | Sample_contact_address | 173 Ashley Ave, BSB 601
| | Sample_contact_city | Charleston
| | Sample_contact_state | SC
| | Sample_contact_zip/postal_code | 29425
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448016/suppl/GSM448016.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448016/suppl/GSM448016.CHP.gz
| | Sample_series_id | GSE17934
| | Sample_series_id | GSE17936
| | Sample_data_row_count | 22690
| | |
|
GSM448017 | GPL339 |
|
mouse pharyngeal arch_E10.5_WT_rep5
|
mouse Second heart field-containing tissue
|
strain: 129P2/OlaHsd backcrossed to C57BL/6 for 2 generations
stage: E10.5
tissue: Second heart field-containing tissue
|
WT5_031307_SA_MOE430A_031307
|
| Sample_geo_accession | GSM448017
| | Sample_status | Public on May 17 2010
| | Sample_submission_date | Sep 02 2009
| | Sample_last_update_date | May 17 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were housed in the Medical University of South Carolina animal facility using institutionally approved protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Pharyngeal arch-containing tissue was collected by dissection from wild-type embryos at E10.5. RNA was prepared from individual tissue isolates by Trizol extraction and purification with the RNeasy Mini kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA (10 ng) was converted into biotin-labeled cDNA suitable for hybridization to Affymetrix GeneChips (Affymetrix, Santa Clara, CA) using the WT-Ovation™ Pico amplification kit and the FL-Ovation™ cDNA Biotin V2 kit (NuGen, San Carlos, CA).
| | Sample_hyb_protocol | Samples were hybridized overnight to GeneChips in accordance with Affymetrix protocols.
| | Sample_scan_protocol | Post hybridization washing, staining and fluorescence scanning were performed using Affymetrix instrumentation in accordance with manufacturer recommendations.
| | Sample_data_processing | Scanned GeneChips (CEL files) were processed with Affymetrix GCOS to generate CHP files.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Jeremy,,Barth
| | Sample_contact_email | barthj@musc.edu
| | Sample_contact_institute | MUSC
| | Sample_contact_address | 173 Ashley Ave, BSB 601
| | Sample_contact_city | Charleston
| | Sample_contact_state | SC
| | Sample_contact_zip/postal_code | 29425
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448017/suppl/GSM448017.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM448nnn/GSM448017/suppl/GSM448017.CHP.gz
| | Sample_series_id | GSE17934
| | Sample_series_id | GSE17936
| | Sample_data_row_count | 22690
| | |
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