Search results for the GEO ID: GSE18061  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM451590 | GPL1261 |
|
wtHSC sample 1 replicate 1
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: wild type
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451590
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451590/suppl/GSM451590_wtHSC_1_1.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
| | |
|
GSM451591 | GPL1261 |
|
wtHSC sample 1 replicate 2
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: wild type
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451591
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451591/suppl/GSM451591_wtHSC_1_2.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
| | |
|
GSM451592 | GPL1261 |
|
wtHSC sample 2 replicate 1
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: wild type
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451592
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451592/suppl/GSM451592_wtHSC_2_1.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
| | |
|
GSM451593 | GPL1261 |
|
wtHSC sample 2 replicate 2
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: wild type
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451593
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451593/suppl/GSM451593_wtHSC_2_2.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
| | |
|
GSM451594 | GPL1261 |
|
htHSC sample 1 replicate 1
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: Crebbp+/-
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451594
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451594/suppl/GSM451594_htHSC_1_1.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
| | |
|
GSM451595 | GPL1261 |
|
htHSC sample 1 replicate 2
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: Crebbp+/-
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451595
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451595/suppl/GSM451595_htHSC_1_2.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
| | |
|
GSM451596 | GPL1261 |
|
htHSC sample 2 replicate 1
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: Crebbp+/-
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451596
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451596/suppl/GSM451596_htHSC_2_1.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
| | |
|
GSM451597 | GPL1261 |
|
htHSC sample 2 replicate 2
|
Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
|
genetic background: C57BL/6
genotype: Crebbp+/-
cell type: Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC
age: 14 dpc
|
14.5dpc fetal liver HSC
|
| Sample_geo_accession | GSM451597
| | Sample_status | Public on Jan 01 2012
| | Sample_submission_date | Sep 10 2009
| | Sample_last_update_date | Jan 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy® micro kit following manufacturer's protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 12ng of total RNA was amplified following the Ovation RNA amplification protocol.
| | Sample_label_protocol_ch1 | 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
| | Sample_hyb_protocol | 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | GCRMA probe summarization and normalization using the Bioconductor gcrma package (http://www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Madeleine,E.,Lemieux
| | Sample_contact_email | mlemieux@bioinfo.ca
| | Sample_contact_phone | 617-595-6695
| | Sample_contact_institute | Bioinfo
| | Sample_contact_address | 275 Main St., Suite 252
| | Sample_contact_city | Plantagenet
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K0B 1L0
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.bioinfo.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451597/suppl/GSM451597_htHSC_2_2.CEL.gz
| | Sample_series_id | GSE18061
| | Sample_data_row_count | 45101
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