Search results for the GEO ID: GSE18070  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM451814 | GPL570 |
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MIIpB (replicate 1)
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MIIpB (replicate 1)
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cell line: MCF10A H-Ras transformed cell line
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Gene expression data from cell line
|
| Sample_geo_accession | GSM451814
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451814/suppl/GSM451814_ST_IIa_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451814/suppl/GSM451814_ST_IIa_1_CEL.txt.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451815 | GPL570 |
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MIIpB (replicate 2)
|
MIIpB (replicate 2)
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cell line: MCF10A H-Ras transformed cell line
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451815
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451815/suppl/GSM451815_ST_IIb_2.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451816 | GPL570 |
|
MIIpB (replicate 3)
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MIIpB (replicate 3)
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cell line: MCF10A H-Ras transformed cell line
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451816
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451816/suppl/GSM451816_ST_IIc_3.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451817 | GPL570 |
|
MIIIpB (replicate 1)
|
MIIIpB (replicate 1)
|
cell line: cell line derived from a xenograft of the MII cells in nude mice that progressed to carcinoma
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451817
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451817/suppl/GSM451817_ST_IIIa_4.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451818 | GPL570 |
|
MIIIpB (replicate 2)
|
MIIIpB (replicate 2)
|
cell line: cell line derived from a xenograft of the MII cells in nude mice that progressed to carcinoma
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451818
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451818/suppl/GSM451818_ST_IIIb_5.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451819 | GPL570 |
|
MIIIpB (replicate 3)
|
MIIIpB (replicate 3)
|
cell line: cell line derived from a xenograft of the MII cells in nude mice that progressed to carcinoma
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451819
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451819/suppl/GSM451819_ST_IIIc_6.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451820 | GPL570 |
|
MIIIpBSmad7 (replicate 1)
|
MIIIpBSmad7 (replicate 1)
|
cell line: MIII overexpressing the inhibitory Smad7
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451820
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451820/suppl/GSM451820_ST_IIISa_7.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451821 | GPL570 |
|
MIIIpBSmad7 (replicate 2)
|
MIIIpBSmad7 (replicate 2)
|
cell line: MIII overexpressing the inhibitory Smad8
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451821
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451821/suppl/GSM451821_ST_IIISb_8.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
| | |
|
GSM451822 | GPL570 |
|
MIIIpBSmad7 (replicate 3)
|
MIIIpBSmad7 (replicate 3)
|
cell line: MIII overexpressing the inhibitory Smad9
|
Gene expression data from cell line
|
| Sample_geo_accession | GSM451822
| | Sample_status | Public on Dec 31 2009
| | Sample_submission_date | Sep 11 2009
| | Sample_last_update_date | Sep 11 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from three biological replicates corresponding to MIIpB, MIIIpB and MIIIpB-Smad7 cells using Trizol (Invitrogen) according to the manufacturer’s protocol, and the RNeasy mini-kit (Qiagen) was used to clean-up the RNA
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | data in this table were processed with RMA method
| | Sample_platform_id | GPL570
| | Sample_contact_name | steve,,shen
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | New York University
| | Sample_contact_address | 545 First Ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM451nnn/GSM451822/suppl/GSM451822_ST_IIISc_9.CEL.gz
| | Sample_series_id | GSE18070
| | Sample_data_row_count | 54675
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