Search results for the GEO ID: GSE18136  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM453573 | GPL1261 |
|
P0hrno3
|
pancreas 0 hrs
|
cell type: CD4 T cells, pancreas infiltrating
agent: diphtheria toxin
time point: 0 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
P0hrno3
|
| Sample_geo_accession | GSM453573
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453573/suppl/GSM453573.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453574 | GPL1261 |
|
P0hrno4
|
pancreas 0 hrs
|
cell type: CD4 T cells, pancreas infiltrating
agent: diphtheria toxin
time point: 0 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
P0hrno4
|
| Sample_geo_accession | GSM453574
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453574/suppl/GSM453574.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453575 | GPL1261 |
|
P15hrno3
|
pancreas 15 hrs
|
cell type: CD4 T cells, pancreas infiltrating
agent: diphtheria toxin
time point: 15 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
P15hrno3
|
| Sample_geo_accession | GSM453575
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453575/suppl/GSM453575.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453576 | GPL1261 |
|
P15hrno4
|
pancreas 15 hrs
|
cell type: CD4 T cells, pancreas infiltrating
agent: diphtheria toxin
time point: 15 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
P15hrno4
|
| Sample_geo_accession | GSM453576
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453576/suppl/GSM453576.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453577 | GPL1261 |
|
P24hrno3
|
pancreas 24 hrs
|
cell type: CD4 T cells, pancreas infiltrating
agent: diphtheria toxin
time point: 24 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
P24hrno3
|
| Sample_geo_accession | GSM453577
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453577/suppl/GSM453577.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453578 | GPL1261 |
|
P24hrno4
|
pancreas 24 hrs
|
cell type: CD4 T cells, pancreas infiltrating
agent: diphtheria toxin
time point: 24 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
P24hrno4
|
| Sample_geo_accession | GSM453578
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453578/suppl/GSM453578.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453579 | GPL1261 |
|
PLN0hrno3
|
PLN 0 hrs
|
cell type: CD4 T cells, pancreas draining lymph node
agent: diphtheria toxin
time point: 0 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
PLN0hrno3
|
| Sample_geo_accession | GSM453579
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453579/suppl/GSM453579.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453580 | GPL1261 |
|
PLN0hrno4
|
PLN 0 hrs
|
cell type: CD4 T cells, pancreas draining lymph node
agent: diphtheria toxin
time point: 0 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
PLN0hrno4
|
| Sample_geo_accession | GSM453580
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453580/suppl/GSM453580.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453581 | GPL1261 |
|
PLN15hrno3
|
PLN 15 hrs
|
cell type: CD4 T cells, pancreas draining lymph node
agent: diphtheria toxin
time point: 15 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
PLN15hrno3
|
| Sample_geo_accession | GSM453581
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453581/suppl/GSM453581.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453582 | GPL1261 |
|
PLN15hrno4
|
PLN 15 hrs
|
cell type: CD4 T cells, pancreas draining lymph node
agent: diphtheria toxin
time point: 15 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
PLN15hrno4
|
| Sample_geo_accession | GSM453582
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453582/suppl/GSM453582.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453583 | GPL1261 |
|
PLN24hrno3
|
PLN 24 hrs
|
cell type: CD4 T cells, pancreas draining lymph node
agent: diphtheria toxin
time point: 24 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
PLN24hrno3
|
| Sample_geo_accession | GSM453583
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453583/suppl/GSM453583.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
| | |
|
GSM453584 | GPL1261 |
|
PLN24hrno4
|
PLN 24 hrs
|
cell type: CD4 T cells, pancreas draining lymph node
agent: diphtheria toxin
time point: 24 hrs
gender: female
age: 4-6 weeks
isolation: FACS CD4+CD3+CD19-CD8-GFP-
genotype: Foxp3-DTR.BDC2.5/NOD
|
PLN24hrno4
|
| Sample_geo_accession | GSM453584
| | Sample_status | Public on Oct 15 2009
| | Sample_submission_date | Sep 16 2009
| | Sample_last_update_date | Sep 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 4-6 week old female Foxp3-DTR.BDC2.5/NOD transgenic mice were treated with diphtheria toxin and CD3+CD4+CD19-CD8-GFP- T cells were isolated by flow cytometry from pancreas and PLN at 0, 15, and 24 hours after depletion
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were sorted into Trizol, total RNA was purified according to manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | BioArray High Yield RNA transcript labeling T7 kit (Enzo Life Sciences)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | CBDM,,Lab
| | Sample_contact_email | cbdm@hms.harvard.edu
| | Sample_contact_phone | 617-432-7747
| | Sample_contact_laboratory | CBDM
| | Sample_contact_department | Microbiology and Immunobiology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM453nnn/GSM453584/suppl/GSM453584.CEL.gz
| | Sample_series_id | GSE18136
| | Sample_data_row_count | 45101
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