Result

Search results for the GEO ID: GSE18195

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM454881

GPL570

071019_Undosed control, biological rep1

Tumor xenograph from undosed mouse

agent: saline, control biological replicate: 1 tissue: solid tumor grown from Hec50co cell line

Gene expression data from biopsy of human tumor xenograph grown in mouse

Sample_geo_accession	GSM454881
Sample_status	Public on Sep 22 2009
Sample_submission_date	Sep 21 2009
Sample_last_update_date	Sep 23 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Mice were injected with saline (undosed) or bevacizumab (avastin) at 0.2 mg/mouse through intraperitoneal injection twice a week, starting the day of cancer cell injection
Sample_growth_protocol_ch1	5,000,000 Hec50co cells (human endometrial cancer derived cell line) were injected into an athymic mouse and solid tumors were allowed to grow.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNeasy used for total RNA extraction and was performed according to manufacture's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Affymetrix One-Cycle Target Labeling Kit).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human HGU133 2.0+ Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL570
Sample_contact_name	Gavin,,Pickett
Sample_contact_laboratory	KUGR
Sample_contact_department	Genomics
Sample_contact_institute	UNM
Sample_contact_address	2325 Camino de Salud NE
Sample_contact_city	Albuquerque
Sample_contact_state	NM
Sample_contact_zip/postal_code	87131
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454881/suppl/GSM454881.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454881/suppl/GSM454881.CHP.gz
Sample_series_id	GSE18195
Sample_data_row_count	54675

GSM454882

GPL570

071019_Undosed control, biological rep2

Tumor xenograph from undosed mouse

agent: saline, control biological replicate: 2 tissue: solid tumor grown from Hec50co cell line

Gene expression data from biopsy of human tumor xenograph grown in mouse

Sample_geo_accession	GSM454882
Sample_status	Public on Sep 22 2009
Sample_submission_date	Sep 21 2009
Sample_last_update_date	Sep 23 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Mice were injected with saline (undosed) or bevacizumab (avastin) at 0.2 mg/mouse through intraperitoneal injection twice a week, starting the day of cancer cell injection
Sample_growth_protocol_ch1	5,000,000 Hec50co cells (human endometrial cancer derived cell line) were injected into an athymic mouse and solid tumors were allowed to grow.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNeasy used for total RNA extraction and was performed according to manufacture's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Affymetrix One-Cycle Target Labeling Kit).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human HGU133 2.0+ Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL570
Sample_contact_name	Gavin,,Pickett
Sample_contact_laboratory	KUGR
Sample_contact_department	Genomics
Sample_contact_institute	UNM
Sample_contact_address	2325 Camino de Salud NE
Sample_contact_city	Albuquerque
Sample_contact_state	NM
Sample_contact_zip/postal_code	87131
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454882/suppl/GSM454882.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454882/suppl/GSM454882.CHP.gz
Sample_series_id	GSE18195
Sample_data_row_count	54675

GSM454883

GPL570

Avastin dosed, biological rep1

Tumor xenograph from mouse dosed with bevacizumab (avastin)

agent: avastin biological replicate: 1 tissue: solid tumor grown from Hec50co cell line

Gene expression data from biopsy of human tumor xenograph grown in mouse dosed with bevacizumab

Sample_geo_accession	GSM454883
Sample_status	Public on Sep 22 2009
Sample_submission_date	Sep 21 2009
Sample_last_update_date	Sep 21 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Mice were injected with saline (undosed) or bevacizumab (avastin) at 0.2 mg/mouse through intraperitoneal injection twice a week, starting the day of cancer cell injection
Sample_growth_protocol_ch1	5,000,000 Hec50co cells (human endometrial cancer derived cell line) were injected into an athymic mouse and solid tumors were allowed to grow.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNeasy used for total RNA extraction and was performed according to manufacture's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Affymetrix One-Cycle Target Labeling Kit).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human HGU133 2.0+ Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL570
Sample_contact_name	Gavin,,Pickett
Sample_contact_laboratory	KUGR
Sample_contact_department	Genomics
Sample_contact_institute	UNM
Sample_contact_address	2325 Camino de Salud NE
Sample_contact_city	Albuquerque
Sample_contact_state	NM
Sample_contact_zip/postal_code	87131
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454883/suppl/GSM454883.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454883/suppl/GSM454883.CHP.gz
Sample_series_id	GSE18195
Sample_data_row_count	54675

GSM454884

GPL570

Avastin dosed, biological rep2

Tumor xenograph from mouse dosed with bevacizumab (avastin)

agent: avastin biological replicate: 2 tissue: solid tumor grown from Hec50co cell line

Gene expression data from biopsy of human tumor xenograph grown in mouse dosed with bevacizumab

Sample_geo_accession	GSM454884
Sample_status	Public on Sep 22 2009
Sample_submission_date	Sep 21 2009
Sample_last_update_date	Sep 21 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Mice were injected with saline (undosed) or bevacizumab (avastin) at 0.2 mg/mouse through intraperitoneal injection twice a week, starting the day of cancer cell injection
Sample_growth_protocol_ch1	5,000,000 Hec50co cells (human endometrial cancer derived cell line) were injected into an athymic mouse and solid tumors were allowed to grow.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNeasy used for total RNA extraction and was performed according to manufacture's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Affymetrix One-Cycle Target Labeling Kit).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human HGU133 2.0+ Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL570
Sample_contact_name	Gavin,,Pickett
Sample_contact_laboratory	KUGR
Sample_contact_department	Genomics
Sample_contact_institute	UNM
Sample_contact_address	2325 Camino de Salud NE
Sample_contact_city	Albuquerque
Sample_contact_state	NM
Sample_contact_zip/postal_code	87131
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454884/suppl/GSM454884.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM454nnn/GSM454884/suppl/GSM454884.CHP.gz
Sample_series_id	GSE18195
Sample_data_row_count	54675

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