Search results for the GEO ID: GSE18198  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM455115 | GPL570 |
|
KOPT-K1_DMSO_01
|
KOPT-K1 cells treated with DMSO
|
cell type: T-cell
cell line: KOPT-K1
|
none
|
| Sample_geo_accession | GSM455115
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455115/suppl/GSM455115.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455116 | GPL570 |
|
KOPT-K1_DMSO_02
|
KOPT-K1 cells treated with DMSO
|
cell type: T-cell
cell line: KOPT-K1
|
none
|
| Sample_geo_accession | GSM455116
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455116/suppl/GSM455116.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455117 | GPL570 |
|
KOPT-K1_DMSO_03
|
KOPT-K1 cells treated with DMSO
|
cell type: T-cell
cell line: KOPT-K1
|
none
|
| Sample_geo_accession | GSM455117
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455117/suppl/GSM455117.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455118 | GPL570 |
|
HPB-ALL_DMSO_01
|
HPB-ALL cells treated with DMSO
|
cell type: T-cell
cell line: HPB-ALL
|
none
|
| Sample_geo_accession | GSM455118
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455118/suppl/GSM455118.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455119 | GPL570 |
|
HPB-ALL_DMSO_02
|
HPB-ALL cells treated with DMSO
|
cell type: T-cell
cell line: HPB-ALL
|
none
|
| Sample_geo_accession | GSM455119
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455119/suppl/GSM455119.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455120 | GPL570 |
|
HPB-ALL_DMSO_03
|
HPB-ALL cells treated with DMSO
|
cell type: T-cell
cell line: HPB-ALL
|
none
|
| Sample_geo_accession | GSM455120
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455120/suppl/GSM455120.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455121 | GPL570 |
|
KOPT-K1_SAHM1_01
|
KOPT-K1 cells treated with SAHM1
|
cell type: T-cell
cell line: KOPT-K1
|
none
|
| Sample_geo_accession | GSM455121
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455121/suppl/GSM455121.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455122 | GPL570 |
|
KOPT-K1_SAHM1_02
|
KOPT-K1 cells treated with SAHM1
|
cell type: T-cell
cell line: KOPT-K1
|
none
|
| Sample_geo_accession | GSM455122
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455122/suppl/GSM455122.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455123 | GPL570 |
|
KOPT-K1_SAHM1_03
|
KOPT-K1 cells treated with SAHM1
|
cell type: T-cell
cell line: KOPT-K1
|
none
|
| Sample_geo_accession | GSM455123
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455123/suppl/GSM455123.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455124 | GPL570 |
|
HPB-ALL_SAHM1_01
|
HPB-ALL cells treated with SAHM1
|
cell type: T-cell
cell line: HPB-ALL
|
none
|
| Sample_geo_accession | GSM455124
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455124/suppl/GSM455124.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455125 | GPL570 |
|
HPB-ALL_SAHM1_02
|
HPB-ALL cells treated with SAHM1
|
cell type: T-cell
cell line: HPB-ALL
|
none
|
| Sample_geo_accession | GSM455125
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455125/suppl/GSM455125.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
GSM455126 | GPL570 |
|
HPB-ALL_SAHM1_03
|
HPB-ALL cells treated with SAHM1
|
cell type: T-cell
cell line: HPB-ALL
|
none
|
| Sample_geo_accession | GSM455126
| | Sample_status | Public on Nov 12 2009
| | Sample_submission_date | Sep 21 2009
| | Sample_last_update_date | Oct 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were cultured in 24-well plates and indicated with SAHM1 or the equivalent amount of DMSO for 24 hours.
| | Sample_growth_protocol_ch1 | T-ALL cells were grown in1640 RPMI with 10% FBS and 1% pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Treated cells were centrifuged at 1000 rpm, washed with cold PBS and total RNA was extracted using a Qiagen Rneasy Kit according to manufacturers instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using standard Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed according to standard protocols for Affymetrix HG-U133 plus 2.0 arrays.
| | Sample_scan_protocol | Arrays were scanned using a GenePix 4000B microarray scanner.
| | Sample_data_processing | Data was processed using GenePattern software available at the Broad Insititute. RMA processing was used with quantile normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Raymond,,Moellering
| | Sample_contact_email | rmoeller@fas.harvard.edu
| | Sample_contact_department | Chemistry and Chemical Biology
| | Sample_contact_institute | Harvard University
| | Sample_contact_address | 12 Oxford Street
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02138
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455126/suppl/GSM455126.CEL.gz
| | Sample_series_id | GSE18198
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
