Search results for the GEO ID: GSE18218  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM455430 | GPL1261 |
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liver_female AFB1-treated Gnm-/- 11 wk
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Liver tissue from 3 mice at 11 weeks old
|
strain: 129/B6
gender: female
genotype: Gnmt knockout
age: 11 weeks
tissue: liver
agent: AFB1
|
Gene expression data from 3 Gnmt -/- female mice liver tissues at 11 weeks old
|
| Sample_geo_accession | GSM455430
| | Sample_status | Public on Oct 02 2009
| | Sample_submission_date | Sep 22 2009
| | Sample_last_update_date | Oct 01 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | At 7 days of age, Gnmt-/- and wild-type mice from the same litter were intraperitoneally injected with 10 mg AFB1/kg of body weight; a second treatment of 40 µg AFB1 per mouse was given at 9 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yi-Ming,Arthur,Chen
| | Sample_contact_email | arthur@ym.edu.tw
| | Sample_contact_phone | 886-2-28267193
| | Sample_contact_fax | 886-2-28270576
| | Sample_contact_department | AIDS Prevention and Research Center
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | 155, Li-Noun St., Sec. 2
| | Sample_contact_city | Taipei
| | Sample_contact_state | Taiwan
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455430/suppl/GSM455430.CEL.gz
| | Sample_series_id | GSE18218
| | Sample_data_row_count | 45101
| | |
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GSM455431 | GPL1261 |
|
liver_female AFB1-treated wild-type 11 wk
|
Liver tissue from 3 mice at 11 weeks old
|
strain: 129/B6
gender: female
genotype: wild-type
age: 11 weeks
tissue: liver
agent: AFB1
|
Gene expression data from 3 wild-type female mice liver tissues at 11 weeks old
|
| Sample_geo_accession | GSM455431
| | Sample_status | Public on Oct 02 2009
| | Sample_submission_date | Sep 22 2009
| | Sample_last_update_date | Oct 01 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | At 7 days of age, Gnmt-/- and wild-type mice from the same litter were intraperitoneally injected with 10 mg AFB1/kg of body weight; a second treatment of 40 µg AFB1 per mouse was given at 9 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yi-Ming,Arthur,Chen
| | Sample_contact_email | arthur@ym.edu.tw
| | Sample_contact_phone | 886-2-28267193
| | Sample_contact_fax | 886-2-28270576
| | Sample_contact_department | AIDS Prevention and Research Center
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | 155, Li-Noun St., Sec. 2
| | Sample_contact_city | Taipei
| | Sample_contact_state | Taiwan
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455431/suppl/GSM455431.CEL.gz
| | Sample_series_id | GSE18218
| | Sample_data_row_count | 45101
| | |
|
GSM455432 | GPL1261 |
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liver_male AFB1-treated Gnm-/- 11 wk
|
Liver tissue from 3 mice at 11 weeks old
|
strain: 129/B6
gender: male
genotype: Gnmt knockout
age: 11 weeks
tissue: liver
agent: AFB1
|
Gene expression data from 3 Gnmt -/- male mice liver tissues at 11 weeks old
|
| Sample_geo_accession | GSM455432
| | Sample_status | Public on Oct 02 2009
| | Sample_submission_date | Sep 22 2009
| | Sample_last_update_date | Oct 01 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | At 7 days of age, Gnmt-/- and wild-type mice from the same litter were intraperitoneally injected with 10 mg AFB1/kg of body weight; a second treatment of 40 µg AFB1 per mouse was given at 9 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yi-Ming,Arthur,Chen
| | Sample_contact_email | arthur@ym.edu.tw
| | Sample_contact_phone | 886-2-28267193
| | Sample_contact_fax | 886-2-28270576
| | Sample_contact_department | AIDS Prevention and Research Center
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | 155, Li-Noun St., Sec. 2
| | Sample_contact_city | Taipei
| | Sample_contact_state | Taiwan
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455432/suppl/GSM455432.CEL.gz
| | Sample_series_id | GSE18218
| | Sample_data_row_count | 45101
| | |
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GSM455433 | GPL1261 |
|
liver_male AFB1-treated wild-type 11 wk
|
Liver tissue from 3 mice at 11 weeks old
|
strain: 129/B6
gender: male
genotype: wild-type
age: 11 weeks
tissue: liver
agent: AFB1
|
Gene expression data from 3 wild-type male mice liver tissues at 11 weeks old
|
| Sample_geo_accession | GSM455433
| | Sample_status | Public on Oct 02 2009
| | Sample_submission_date | Sep 22 2009
| | Sample_last_update_date | Oct 01 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | At 7 days of age, Gnmt-/- and wild-type mice from the same litter were intraperitoneally injected with 10 mg AFB1/kg of body weight; a second treatment of 40 µg AFB1 per mouse was given at 9 weeks of age.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yi-Ming,Arthur,Chen
| | Sample_contact_email | arthur@ym.edu.tw
| | Sample_contact_phone | 886-2-28267193
| | Sample_contact_fax | 886-2-28270576
| | Sample_contact_department | AIDS Prevention and Research Center
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | 155, Li-Noun St., Sec. 2
| | Sample_contact_city | Taipei
| | Sample_contact_state | Taiwan
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455433/suppl/GSM455433.CEL.gz
| | Sample_series_id | GSE18218
| | Sample_data_row_count | 45101
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