Search results for the GEO ID: GSE18232  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM455560 | GPL96 |
|
HCT116 treated with DMSO
|
HCT116 cell line
|
cell line: HCT116
tissue: colorectal cancer
genotype: pseudo diploide
age: passage not known
|
Gene expression data from HCT116 cells treated with DMSO for 48 hours (control)
|
| Sample_geo_accession | GSM455560
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455560/suppl/GSM455560.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455561 | GPL96 |
|
HCT116 treated with AG1478
|
HCT116 cell line
|
cell line: HCT116
tissue: colorectal cancer
genotype: pseudo diploide
age: passage not known
|
Gene expression data from HCT116 cells treated with AG1478 for 48 hours
|
| Sample_geo_accession | GSM455561
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455561/suppl/GSM455561.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455562 | GPL96 |
|
HCT116 treated with Sulindac Sulfide
|
HCT116 cell line
|
cell line: HCT116
tissue: colorectal cancer
genotype: pseudo diploide
age: passage not known
|
Gene expression data from HCT116 cells treated with Sulindac Sulfide for 48 hours
|
| Sample_geo_accession | GSM455562
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455562/suppl/GSM455562.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455563 | GPL96 |
|
HCT116 treated with Sulindac Sulfone
|
HCT116 cell line
|
cell line: HCT116
tissue: colorectal cancer
genotype: pseudo diploide
age: passage not known
|
Gene expression data from HCT116 cells treated withSulindac Sulfone for 48 hours
|
| Sample_geo_accession | GSM455563
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455563/suppl/GSM455563.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455564 | GPL96 |
|
HCT116 treated with PD98059
|
HCT116 cell line
|
cell line: HCT116
tissue: colorectal cancer
genotype: pseudo diploide
age: passage not known
|
Gene expression data from HCT116 cells treated with PD98059 for 48 hours
|
| Sample_geo_accession | GSM455564
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455564/suppl/GSM455564.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455565 | GPL96 |
|
HCT116 treated with U0126
|
HCT116 cell line
|
cell line: HCT116
tissue: colorectal cancer
genotype: pseudo diploide
age: passage not known
|
Gene expression data from HCT116 cells treated with U0126 for 48 hours
|
| Sample_geo_accession | GSM455565
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455565/suppl/GSM455565.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455566 | GPL96 |
|
HT29 treated with DMSO
|
HT29 cell line
|
cell line: HT29
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from HT29 cells treated with DMSO for 48 hours (control)
|
| Sample_geo_accession | GSM455566
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455566/suppl/GSM455566.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455567 | GPL96 |
|
HT29 treated with AG1478
|
HT29 cell line
|
cell line: HT29
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from HT29 cells treated with AG1478 for 48 hours
|
| Sample_geo_accession | GSM455567
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455567/suppl/GSM455567.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455568 | GPL96 |
|
HT29 treated with Sulindac Sulfide
|
HT29 cell line
|
cell line: HT29
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from HT29 cells treated withSulindac Sulfide for 48 hours
|
| Sample_geo_accession | GSM455568
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455568/suppl/GSM455568.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455569 | GPL96 |
|
HT29 treated with Sulindac Sulfone
|
HT29 cell line
|
cell line: HT29
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from HT29 cells treated with Sulindac Sulfone for 48 hours
|
| Sample_geo_accession | GSM455569
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455569/suppl/GSM455569.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455570 | GPL96 |
|
HT29 treated with PD98059
|
HT29 cell line
|
cell line: HT29
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from HT29 cells treated with PD98059 for 48 hours
|
| Sample_geo_accession | GSM455570
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455570/suppl/GSM455570.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455571 | GPL96 |
|
HT29 treated with U0126
|
HT29 cell line
|
cell line: HT29
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from HT29 cells treated with U0126 for 48 hours
|
| Sample_geo_accession | GSM455571
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455571/suppl/GSM455571.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455572 | GPL96 |
|
SW480 treated with DMSO
|
SW480 cell line
|
cell line: SW480
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from SW480 cells treated with DMSO for 48 hours (control)
|
| Sample_geo_accession | GSM455572
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455572/suppl/GSM455572.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455573 | GPL96 |
|
SW480 treated with AG1478
|
SW480 cell line
|
cell line: SW480
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from SW480 cells treated with AG1478 for 48 hours
|
| Sample_geo_accession | GSM455573
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455573/suppl/GSM455573.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455574 | GPL96 |
|
SW480 treated with Sulindac Sulfide
|
SW480 cell line
|
cell line: SW480
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from SW480 cells treated with Sulindac Sulfide for 48 hours
|
| Sample_geo_accession | GSM455574
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455574/suppl/GSM455574.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455575 | GPL96 |
|
SW480 treated with Sulindac Sulfone
|
SW480 cell line
|
cell line: SW480
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from SW480 cells treated with Sulindac Sulfone for 48 hours
|
| Sample_geo_accession | GSM455575
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455575/suppl/GSM455575.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455576 | GPL96 |
|
SW480 treated with PD98059
|
SW480 cell line
|
cell line: SW480
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from SW480 cells treated with PD98059 for 48 hours
|
| Sample_geo_accession | GSM455576
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455576/suppl/GSM455576.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
GSM455577 | GPL96 |
|
SW480 treated with U0126
|
SW480 cell line
|
cell line: SW480
tissue: colorectal cancer
genotype: aneuploide
age: passage not known
|
Gene expression data from SW480 cells treated with U0126 for 48 hours
|
| Sample_geo_accession | GSM455577
| | Sample_status | Public on Oct 09 2010
| | Sample_submission_date | Sep 23 2009
| | Sample_last_update_date | Oct 09 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | After 24 hours, the cells were treated once with the indicated inhibitors for 48 hours.
| | Sample_growth_protocol_ch1 | SW480, HT29 and HCT116 cells were cultured in complete L-15 medium at 37 °C and 5% CO2 in a humified incubator.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labelling of RNA targets were performed according to protocols provided by Affymetrix.
| | Sample_hyb_protocol | Hybridization and post-hybridization procedures were performed according to protocols provided by Affymetrix.
| | Sample_scan_protocol | Arrays were scanned twice at 3µm resolution using a confocal argon laser scanner (Hewlett-Packard, Santa Clara, CA), controlled by Microarray Suite 5.0 software (Affymetrix). Photoemission was detected by a photomultiplier tube through a 570-nm long-pass filter.
| | Sample_data_processing | Computer-generated array images were overlayed with a virtual grid, controlled by Microarray Suite 5.0 software. About 40 pixels within each feature were averaged after discarding outliers and pixels close to feature boundaries.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Karsten,,Jürchott
| | Sample_contact_email | karsten.juerchott@charite.de
| | Sample_contact_department | Institute of Theoretical Biology
| | Sample_contact_institute | Charité - Universitätsmedizin Berlin
| | Sample_contact_address | Invalidenstr. 43
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | D-10115
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM455nnn/GSM455577/suppl/GSM455577.CEL.gz
| | Sample_series_id | GSE18232
| | Sample_data_row_count | 22283
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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