Search results for the GEO ID: GSE18271  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM456372 | GPL570 |
|
Neuroblastoma, #89
|
gn
|
tissue: ganglioneuroma
|
inss-st-1
itcc0012
|
| Sample_geo_accession | GSM456372
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456372/suppl/GSM456372.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456373 | GPL570 |
|
Neuroblastoma, #90
|
gn
|
tissue: ganglioneuroma
|
inss-st-4
itcc0014
|
| Sample_geo_accession | GSM456373
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456373/suppl/GSM456373.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456374 | GPL570 |
|
Neuroblastoma, #91
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-1
itcc0029
|
| Sample_geo_accession | GSM456374
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456374/suppl/GSM456374.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456375 | GPL570 |
|
Neuroblastoma, #92
|
gn
|
tissue: ganglioneuroma
|
inss-st-2
itcc0108
|
| Sample_geo_accession | GSM456375
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456375/suppl/GSM456375.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456376 | GPL570 |
|
Neuroblastoma, #93
|
gn
|
tissue: ganglioneuroma
|
inss-st-2
itcc0110
|
| Sample_geo_accession | GSM456376
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456376/suppl/GSM456376.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456377 | GPL570 |
|
Neuroblastoma, #94
|
gn
|
tissue: ganglioneuroma
|
inss-st-2
itcc0112
|
| Sample_geo_accession | GSM456377
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456377/suppl/GSM456377.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456378 | GPL570 |
|
Neuroblastoma, #95
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-2
itcc0113
|
| Sample_geo_accession | GSM456378
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456378/suppl/GSM456378.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456379 | GPL570 |
|
Neuroblastoma, #96
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-2
itcc0115
|
| Sample_geo_accession | GSM456379
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456379/suppl/GSM456379.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456380 | GPL570 |
|
Neuroblastoma, #97
|
gn
|
tissue: ganglioneuroma
|
inss-st-1
itcc0116
|
| Sample_geo_accession | GSM456380
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456380/suppl/GSM456380.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456381 | GPL570 |
|
Neuroblastoma, #98
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-2
itcc0124
|
| Sample_geo_accession | GSM456381
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456381/suppl/GSM456381.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456382 | GPL570 |
|
Neuroblastoma, #99
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-1
itcc0128
|
| Sample_geo_accession | GSM456382
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456382/suppl/GSM456382.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456383 | GPL570 |
|
Neuroblastoma, #100
|
gn
|
tissue: ganglioneuroma
|
inss-st-4
itcc0131
|
| Sample_geo_accession | GSM456383
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456383/suppl/GSM456383.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456384 | GPL570 |
|
Neuroblastoma, #101
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-1
itcc0139
|
| Sample_geo_accession | GSM456384
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456384/suppl/GSM456384.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456385 | GPL570 |
|
Neuroblastoma, #102
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-1
itcc0140
|
| Sample_geo_accession | GSM456385
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456385/suppl/GSM456385.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456386 | GPL570 |
|
Neuroblastoma, #103
|
gn
|
tissue: ganglioneuroma
|
inss-st-2
itcc0142
|
| Sample_geo_accession | GSM456386
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456386/suppl/GSM456386.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456387 | GPL570 |
|
Neuroblastoma, #104
|
gn
|
tissue: ganglioneuroma
|
inss-st-1
itcc0153
|
| Sample_geo_accession | GSM456387
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456387/suppl/GSM456387.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456388 | GPL570 |
|
Neuroblastoma, #105
|
gn
|
tissue: ganglioneuroma
|
inss-st-1
itcc0156
|
| Sample_geo_accession | GSM456388
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456388/suppl/GSM456388.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456389 | GPL570 |
|
Neuroblastoma, #106
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-3
itcc0166
|
| Sample_geo_accession | GSM456389
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456389/suppl/GSM456389.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456390 | GPL570 |
|
Neuroblastoma, #107
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-2
itcc0186
|
| Sample_geo_accession | GSM456390
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456390/suppl/GSM456390.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456391 | GPL570 |
|
Neuroblastoma, #108
|
gn
|
tissue: ganglioneuroma
|
inss-st-1
itcc0222
|
| Sample_geo_accession | GSM456391
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456391/suppl/GSM456391.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456392 | GPL570 |
|
Neuroblastoma, #109
|
gnb
|
tissue: ganglioneuroblastoma
|
inss-st-2
itcc0289
|
| Sample_geo_accession | GSM456392
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456392/suppl/GSM456392.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
GSM456393 | GPL570 |
|
Neuroblastoma, #110
|
gn
|
tissue: ganglioneuroma
|
inss-st-4
itcc0363
|
| Sample_geo_accession | GSM456393
| | Sample_status | Public on Sep 24 2012
| | Sample_submission_date | Sep 24 2009
| | Sample_last_update_date | Sep 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Trizol (Invitrogen) and purified with RNeasy (Qiagen) according to manufacturer’s protocol. RNA sample integrity was checked on an Agilent 2100 Bioanalyzer (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 4 µg of total RNA was used for cRNA synthesis and fragmented. Labeling was performed with One-Cycle cDNA synthesis Kit (Affymetrix) according to manufacturer’s protocol. Sample quality was checked on a Bioanalyzer prior and after fragmentation.
| | Sample_hyb_protocol | 10 µg of labeled cRNA was hybridized to Affymetrix Human genome U133 Plus 2.0 arrays according to manufacturer’s protocol (Affymetrix).
| | Sample_scan_protocol | Arrays were scanned with a GeneChip Scanner 3000 (Affymetrix) according to manufacturer’s protocol.
| | Sample_data_processing = Expression data (CEL files) were normalized with the MAS5.0 algorithm (target signal | 100) using GCOS software (Affymetrix).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Rogier,,Versteeg
| | Sample_contact_email | r.versteeg@amc.uva.nl
| | Sample_contact_department | Department of Human Genetics
| | Sample_contact_institute | Academic Medical Centre, University of Amsterdam
| | Sample_contact_address | P.O. Box 22700
| | Sample_contact_city | Amsterdam
| | Sample_contact_zip/postal_code | 1100DE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM456nnn/GSM456393/suppl/GSM456393.CEL.gz
| | Sample_series_id | GSE18271
| | Sample_series_id | GSE18272
| | Sample_data_row_count | 54675
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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