Search results for the GEO ID: GSE18409  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM458998 | GPL8300 |
|
js1
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM458998
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM458nnn/GSM458998/suppl/GSM458998.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM458999 | GPL8300 |
|
js2
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: anti-ngf
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM458999
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM458nnn/GSM458999/suppl/GSM458999.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459000 | GPL8300 |
|
js3
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459000
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459000/suppl/GSM459000.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459001 | GPL8300 |
|
js4
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: anti-bdnf
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459001
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459001/suppl/GSM459001.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459002 | GPL8300 |
|
js5
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459002
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459002/suppl/GSM459002.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459003 | GPL8300 |
|
js6
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459003
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459003/suppl/GSM459003.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459004 | GPL8300 |
|
js7
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: anti-ngf-bdgf
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459004
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459004/suppl/GSM459004.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459005 | GPL8300 |
|
psj02
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: none
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459005
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459005/suppl/GSM459005.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459006 | GPL8300 |
|
psj03
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: none
time (hrs after neurotrophin ligand treatment): 0
|
no additional information
|
| Sample_geo_accession | GSM459006
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459006/suppl/GSM459006.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459007 | GPL8300 |
|
psj04
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: bdnf
time (hrs after neurotrophin ligand treatment): 0.5
|
no additional information
|
| Sample_geo_accession | GSM459007
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459007/suppl/GSM459007.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459008 | GPL8300 |
|
psj05
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: bdnf
time (hrs after neurotrophin ligand treatment): 1
|
no additional information
|
| Sample_geo_accession | GSM459008
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459008/suppl/GSM459008.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459009 | GPL8300 |
|
psj06
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: bdnf
time (hrs after neurotrophin ligand treatment): 6
|
no additional information
|
| Sample_geo_accession | GSM459009
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459009/suppl/GSM459009.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459010 | GPL8300 |
|
psj07
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: bdnf
time (hrs after neurotrophin ligand treatment): 24
|
no additional information
|
| Sample_geo_accession | GSM459010
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459010/suppl/GSM459010.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459011 | GPL8300 |
|
psj08
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: none
time (hrs after neurotrophin ligand treatment): 0
|
no additional information
|
| Sample_geo_accession | GSM459011
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459011/suppl/GSM459011.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459012 | GPL8300 |
|
psj09
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: ngf
time (hrs after neurotrophin ligand treatment): 0.5
|
no additional information
|
| Sample_geo_accession | GSM459012
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459012/suppl/GSM459012.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459013 | GPL8300 |
|
psj10
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: ngf
time (hrs after neurotrophin ligand treatment): 1
|
no additional information
|
| Sample_geo_accession | GSM459013
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459013/suppl/GSM459013.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459014 | GPL8300 |
|
psj11
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: ngf
time (hrs after neurotrophin ligand treatment): 6
|
no additional information
|
| Sample_geo_accession | GSM459014
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459014/suppl/GSM459014.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459015 | GPL8300 |
|
psj12
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: ngf
time (hrs after neurotrophin ligand treatment): 24
|
no additional information
|
| Sample_geo_accession | GSM459015
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459015/suppl/GSM459015.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459016 | GPL8300 |
|
psj13
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: none
time (hrs after neurotrophin ligand treatment): 0
|
no additional information
|
| Sample_geo_accession | GSM459016
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459016/suppl/GSM459016.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459017 | GPL8300 |
|
psj14
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: ngf-bdnf
time (hrs after neurotrophin ligand treatment): 0.5
|
no additional information
|
| Sample_geo_accession | GSM459017
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459017/suppl/GSM459017.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459018 | GPL8300 |
|
psj15
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: ngf-bdnf
time (hrs after neurotrophin ligand treatment): 1
|
no additional information
|
| Sample_geo_accession | GSM459018
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459018/suppl/GSM459018.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459019 | GPL8300 |
|
psj16
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: ngf-bdnf
time (hrs after neurotrophin ligand treatment): 6
|
no additional information
|
| Sample_geo_accession | GSM459019
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459019/suppl/GSM459019.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459020 | GPL8300 |
|
psj17
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: ngf-bdnf
time (hrs after neurotrophin ligand treatment): 24
|
no additional information
|
| Sample_geo_accession | GSM459020
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459020/suppl/GSM459020.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459021 | GPL8300 |
|
psj35st
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trkb
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459021
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459021/suppl/GSM459021.cel.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459022 | GPL8300 |
|
psj36st
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: vec
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459022
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459022/suppl/GSM459022.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459023 | GPL8300 |
|
psj37st
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: none
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459023
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459023/suppl/GSM459023.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459024 | GPL8300 |
|
psj38st
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459024
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459024/suppl/GSM459024.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
GSM459025 | GPL8300 |
|
psj39st
|
neurotrophin-receptor null cell line SY5Y transfected with Trk, +/- activation
|
transfectants: trka
ligand treatment: none
time (hrs after neurotrophin ligand treatment): none
|
no additional information
|
| Sample_geo_accession | GSM459025
| | Sample_status | Public on Oct 05 2009
| | Sample_submission_date | Oct 05 2009
| | Sample_last_update_date | Oct 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | SY5Y cells and TrkA/B expressing subclones were grown in RPMI 1640 containing 10 % FCS at 37°C in an atmosphere containing 5% CO2 to 50-75% confluency and stimulated with the respective neurotrophins for the time indicated (see Characteristics attribute)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Following neurotrophin treatment, the cells were harvested and lysed using Trizol, followed by QIAGEN Rneasy mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | According the manufacturers recommendations (Affymetrix).
| | Sample_hyb_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_scan_protocol | According the manufacturers recommendations (Affymetrix).
| | Sample_data_processing | Signal intensities were determined using GeneChip Microarray Suite (MAS) 5.0.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Alexander,,Schramm
| | Sample_contact_email | alexander.schramm@uk-essen.de
| | Sample_contact_laboratory | Hematology/Oncology Lab
| | Sample_contact_department | Childrens Hospital
| | Sample_contact_institute | University Hospital Essen
| | Sample_contact_address | Hufelandstr. 55
| | Sample_contact_city | Essen
| | Sample_contact_zip/postal_code | 45122
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM459nnn/GSM459025/suppl/GSM459025.CEL.gz
| | Sample_series_id | GSE18409
| | Sample_data_row_count | 12625
| | |
|
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| |
Make groups for comparisons |
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