Search results for the GEO ID: GSE18565  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM432175 | GPL570 |
|
CD16- 1
|
human CD16- monocytes
|
monocyte subsets: CD16- monocytes
|
none
|
| Sample_geo_accession | GSM432175
| | Sample_status | Public on Dec 07 2009
| | Sample_submission_date | Jul 22 2009
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Three to four x 10^6 cells per sample were lysed with TRI-reagent (Sigma) and stored at -80°C. Ten µg linear acrylamide (Ambion) was added to lysates and RNA was isolated by phenol/chloroform extraction and precipitation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Per human monocyte sample, 1 µg total RNA was processed using Ambions MessageAmp II Biotin Enhanced labeling kit according to the manufacterers instruction.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | All arrays were analysed with ArrayAssist (Stratagene). We used GC-RMA, and then in conjunction with MAS5 analysis to determine present or absent genes we compared the two subsets within each species (eg: we compared human CD16- and CD16+ monocytes) using an unpaired T test with asymptotic P value computation and Benjamini-Hochburg correction.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loems,,Ziegler-Heitbrock
| | Sample_contact_email | ziegler-heitbrock@helmholtz-muenchen.de
| | Sample_contact_phone | 0049-89-3187-1882
| | Sample_contact_department | Asklepios-Fachklinik and Helmholtz Zentrum München
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Robert-Koch Allee 29
| | Sample_contact_city | Gauting
| | Sample_contact_zip/postal_code | D-82131
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM432nnn/GSM432175/suppl/GSM432175.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE18565
| | Sample_data_row_count | 54675
| | |
|
GSM432176 | GPL570 |
|
CD16- 2
|
human CD16- monocytes
|
monocyte subsets: CD16- monocytes
|
none
|
| Sample_geo_accession | GSM432176
| | Sample_status | Public on Dec 07 2009
| | Sample_submission_date | Jul 22 2009
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Three to four x 10^6 cells per sample were lysed with TRI-reagent (Sigma) and stored at -80°C. Ten µg linear acrylamide (Ambion) was added to lysates and RNA was isolated by phenol/chloroform extraction and precipitation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Per human monocyte sample, 1 µg total RNA was processed using Ambions MessageAmp II Biotin Enhanced labeling kit according to the manufacterers instruction.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | All arrays were analysed with ArrayAssist (Stratagene). We used GC-RMA, and then in conjunction with MAS5 analysis to determine present or absent genes we compared the two subsets within each species (eg: we compared human CD16- and CD16+ monocytes) using an unpaired T test with asymptotic P value computation and Benjamini-Hochburg correction.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loems,,Ziegler-Heitbrock
| | Sample_contact_email | ziegler-heitbrock@helmholtz-muenchen.de
| | Sample_contact_phone | 0049-89-3187-1882
| | Sample_contact_department | Asklepios-Fachklinik and Helmholtz Zentrum München
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Robert-Koch Allee 29
| | Sample_contact_city | Gauting
| | Sample_contact_zip/postal_code | D-82131
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM432nnn/GSM432176/suppl/GSM432176.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE18565
| | Sample_data_row_count | 54675
| | |
|
GSM432177 | GPL570 |
|
CD16- 3
|
human CD16- monocytes
|
monocyte subsets: CD16- monocytes
|
none
|
| Sample_geo_accession | GSM432177
| | Sample_status | Public on Dec 07 2009
| | Sample_submission_date | Jul 22 2009
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Three to four x 10^6 cells per sample were lysed with TRI-reagent (Sigma) and stored at -80°C. Ten µg linear acrylamide (Ambion) was added to lysates and RNA was isolated by phenol/chloroform extraction and precipitation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Per human monocyte sample, 1 µg total RNA was processed using Ambions MessageAmp II Biotin Enhanced labeling kit according to the manufacterers instruction.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | All arrays were analysed with ArrayAssist (Stratagene). We used GC-RMA, and then in conjunction with MAS5 analysis to determine present or absent genes we compared the two subsets within each species (eg: we compared human CD16- and CD16+ monocytes) using an unpaired T test with asymptotic P value computation and Benjamini-Hochburg correction.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loems,,Ziegler-Heitbrock
| | Sample_contact_email | ziegler-heitbrock@helmholtz-muenchen.de
| | Sample_contact_phone | 0049-89-3187-1882
| | Sample_contact_department | Asklepios-Fachklinik and Helmholtz Zentrum München
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Robert-Koch Allee 29
| | Sample_contact_city | Gauting
| | Sample_contact_zip/postal_code | D-82131
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM432nnn/GSM432177/suppl/GSM432177.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE18565
| | Sample_data_row_count | 54675
| | |
|
GSM432178 | GPL570 |
|
CD16+ 1
|
human CD16+ monocytes
|
monocyte subsets: CD16+ monocytes
|
none
|
| Sample_geo_accession | GSM432178
| | Sample_status | Public on Dec 07 2009
| | Sample_submission_date | Jul 22 2009
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Three to four x 10^6 cells per sample were lysed with TRI-reagent (Sigma) and stored at -80°C. Ten µg linear acrylamide (Ambion) was added to lysates and RNA was isolated by phenol/chloroform extraction and precipitation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Per human monocyte sample, 1 µg total RNA was processed using Ambions MessageAmp II Biotin Enhanced labeling kit according to the manufacterers instruction.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | All arrays were analysed with ArrayAssist (Stratagene). We used GC-RMA, and then in conjunction with MAS5 analysis to determine present or absent genes we compared the two subsets within each species (eg: we compared human CD16- and CD16+ monocytes) using an unpaired T test with asymptotic P value computation and Benjamini-Hochburg correction.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loems,,Ziegler-Heitbrock
| | Sample_contact_email | ziegler-heitbrock@helmholtz-muenchen.de
| | Sample_contact_phone | 0049-89-3187-1882
| | Sample_contact_department | Asklepios-Fachklinik and Helmholtz Zentrum München
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Robert-Koch Allee 29
| | Sample_contact_city | Gauting
| | Sample_contact_zip/postal_code | D-82131
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM432nnn/GSM432178/suppl/GSM432178.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE18565
| | Sample_data_row_count | 54675
| | |
|
GSM432179 | GPL570 |
|
CD16+ 2
|
human CD16+ monocytes
|
monocyte subsets: CD16+ monocytes
|
none
|
| Sample_geo_accession | GSM432179
| | Sample_status | Public on Dec 07 2009
| | Sample_submission_date | Jul 22 2009
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Three to four x 10^6 cells per sample were lysed with TRI-reagent (Sigma) and stored at -80°C. Ten µg linear acrylamide (Ambion) was added to lysates and RNA was isolated by phenol/chloroform extraction and precipitation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Per human monocyte sample, 1 µg total RNA was processed using Ambions MessageAmp II Biotin Enhanced labeling kit according to the manufacterers instruction.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | All arrays were analysed with ArrayAssist (Stratagene). We used GC-RMA, and then in conjunction with MAS5 analysis to determine present or absent genes we compared the two subsets within each species (eg: we compared human CD16- and CD16+ monocytes) using an unpaired T test with asymptotic P value computation and Benjamini-Hochburg correction.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loems,,Ziegler-Heitbrock
| | Sample_contact_email | ziegler-heitbrock@helmholtz-muenchen.de
| | Sample_contact_phone | 0049-89-3187-1882
| | Sample_contact_department | Asklepios-Fachklinik and Helmholtz Zentrum München
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Robert-Koch Allee 29
| | Sample_contact_city | Gauting
| | Sample_contact_zip/postal_code | D-82131
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM432nnn/GSM432179/suppl/GSM432179.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE18565
| | Sample_data_row_count | 54675
| | |
|
GSM432180 | GPL570 |
|
CD16+ 3
|
human CD16+ monocytes
|
monocyte subsets: CD16+ monocytes
|
none
|
| Sample_geo_accession | GSM432180
| | Sample_status | Public on Dec 07 2009
| | Sample_submission_date | Jul 22 2009
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Three to four x 10^6 cells per sample were lysed with TRI-reagent (Sigma) and stored at -80°C. Ten µg linear acrylamide (Ambion) was added to lysates and RNA was isolated by phenol/chloroform extraction and precipitation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Per human monocyte sample, 1 µg total RNA was processed using Ambions MessageAmp II Biotin Enhanced labeling kit according to the manufacterers instruction.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | All arrays were analysed with ArrayAssist (Stratagene). We used GC-RMA, and then in conjunction with MAS5 analysis to determine present or absent genes we compared the two subsets within each species (eg: we compared human CD16- and CD16+ monocytes) using an unpaired T test with asymptotic P value computation and Benjamini-Hochburg correction.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loems,,Ziegler-Heitbrock
| | Sample_contact_email | ziegler-heitbrock@helmholtz-muenchen.de
| | Sample_contact_phone | 0049-89-3187-1882
| | Sample_contact_department | Asklepios-Fachklinik and Helmholtz Zentrum München
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Robert-Koch Allee 29
| | Sample_contact_city | Gauting
| | Sample_contact_zip/postal_code | D-82131
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM432nnn/GSM432180/suppl/GSM432180.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE18565
| | Sample_data_row_count | 54675
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