Search results for the GEO ID: GSE18637  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM252801 | GPL570 |
|
large airways, non-smoker 005
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 38
Sex: M
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in airway epithelial cells of normal non-smokers, phenotypic normal smokers, smokers with early COPD, and smokers with COPD.
|
| Sample_geo_accession | GSM252801
| | Sample_status | Public on Dec 19 2008
| | Sample_submission_date | Dec 21 2007
| | Sample_last_update_date | Dec 21 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252801/suppl/GSM252801.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252801/suppl/GSM252801.CHP.gz
| | Sample_series_id | GSE10006
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM252803 | GPL570 |
|
large airways, non-smoker 011
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 49
Sex: M
Ethnic group: white
Smoking status: non-smoker
|
Comparison of gene expression in airway epithelial cells of normal non-smokers, phenotypic normal smokers, smokers with early COPD, and smokers with COPD.
|
| Sample_geo_accession | GSM252803
| | Sample_status | Public on Dec 19 2008
| | Sample_submission_date | Dec 21 2007
| | Sample_last_update_date | Dec 21 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252803/suppl/GSM252803.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252803/suppl/GSM252803.CHP.gz
| | Sample_series_id | GSE10006
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM252805 | GPL570 |
|
large airways, non-smoker 035
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 45
Sex: M
Ethnic group: white
Smoking status: non-smoker
|
Comparison of gene expression in airway epithelial cells of normal non-smokers, phenotypic normal smokers, smokers with early COPD, and smokers with COPD.
|
| Sample_geo_accession | GSM252805
| | Sample_status | Public on Dec 19 2008
| | Sample_submission_date | Dec 21 2007
| | Sample_last_update_date | Dec 21 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252805/suppl/GSM252805.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252805/suppl/GSM252805.CHP.gz
| | Sample_series_id | GSE10006
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM252806 | GPL570 |
|
large airways, non-smoker 042
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 42
Sex: M
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in airway epithelial cells of normal non-smokers, phenotypic normal smokers, smokers with early COPD, and smokers with COPD.
|
| Sample_geo_accession | GSM252806
| | Sample_status | Public on Dec 19 2008
| | Sample_submission_date | Dec 21 2007
| | Sample_last_update_date | Dec 21 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252806/suppl/GSM252806.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252806/suppl/GSM252806.CHP.gz
| | Sample_series_id | GSE10006
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM252807 | GPL570 |
|
large airways, non-smoker 044
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 56
Sex: M
Ethnic group: white
Smoking status: non-smoker
|
Comparison of gene expression in airway epithelial cells of normal non-smokers, phenotypic normal smokers, smokers with early COPD, and smokers with COPD.
|
| Sample_geo_accession | GSM252807
| | Sample_status | Public on Dec 19 2008
| | Sample_submission_date | Dec 21 2007
| | Sample_last_update_date | Dec 21 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252807/suppl/GSM252807.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM252nnn/GSM252807/suppl/GSM252807.CHP.gz
| | Sample_series_id | GSE10006
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256181 | GPL570 |
|
large airways, non-smoker 036
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 45
Sex: F
Ethnic group: hispnaic
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256181
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256181/suppl/GSM256181.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256181/suppl/GSM256181.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256182 | GPL570 |
|
large airways, non-smoker 038
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 47
Sex: F
Ethnic group: asian
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256182
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256182/suppl/GSM256182.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256182/suppl/GSM256182.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256183 | GPL570 |
|
large airways, non-smoker 040
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 29
Sex: F
Ethnic group: black/hispanic
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256183
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256183/suppl/GSM256183.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256183/suppl/GSM256183.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256184 | GPL570 |
|
large airways, non-smoker 041
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 39
Sex: F
Ethnic group: hispanic
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256184
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256184/suppl/GSM256184.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256184/suppl/GSM256184.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256185 | GPL570 |
|
large airways, non-smoker 050
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 38
Sex: M
Ethnic group: hispanic
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256185
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256185/suppl/GSM256185.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256185/suppl/GSM256185.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256186 | GPL570 |
|
large airways, non-smoker 047
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 49
Sex: M
Ethnic group: white
Smoking status:smoker, 1 pack-years
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256186
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256186/suppl/GSM256186.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256186/suppl/GSM256186.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256187 | GPL570 |
|
large airways, non-smoker 045
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 41
Sex: F
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256187
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256187/suppl/GSM256187.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256187/suppl/GSM256187.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256188 | GPL570 |
|
large airways, non-smoker 006
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 47
Sex: M
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256188
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256188/suppl/GSM256188.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256188/suppl/GSM256188.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256189 | GPL570 |
|
large airways, non-smoker 065
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 49
Sex: M
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256189
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256189/suppl/GSM256189.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256189/suppl/GSM256189.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256190 | GPL570 |
|
large airways, non-smoker 066
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 39
Sex: M
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256190
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256190/suppl/GSM256190.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256190/suppl/GSM256190.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256191 | GPL570 |
|
large airways, non-smoker 059
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 35
Sex: M
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256191
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256191/suppl/GSM256191.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256191/suppl/GSM256191.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256192 | GPL570 |
|
large airways, non-smoker 072
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 22
Sex: F
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256192
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256192/suppl/GSM256192.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256192/suppl/GSM256192.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256193 | GPL570 |
|
large airways, non-smoker 078
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 31
Sex: M
Ethnic group: white
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256193
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256193/suppl/GSM256193.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256193/suppl/GSM256193.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
GSM256194 | GPL570 |
|
large airways, non-smoker 071
|
large airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 37
Sex: M
Ethnic group: black
Smoking status: non-smoker
|
Comparison of gene expression in large airway epithleium of normal non-smokers and normal smokers
|
| Sample_geo_accession | GSM256194
| | Sample_status | Public on Jan 06 2009
| | Sample_submission_date | Jan 10 2008
| | Sample_last_update_date | Jan 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA for HuGeneFL and HG-U133A or 2 microg total RNA for HG-U133 Plus 2.0 (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL, HG-U133A or HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray 2500 for HuGeneFL and the GeneChip Scanner 3000 7G for HG-U133A and HG-U133 Plus 2.0.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256194/suppl/GSM256194.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256194/suppl/GSM256194.CHP.gz
| | Sample_series_id | GSE10135
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE16696
| | Sample_series_id | GSE18637
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
