Search results for the GEO ID: GSE18669  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM463711 | GPL1261 |
|
HSC rep1
|
bone marrow derived HSC
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: hematopoieitic stem cells (HSC)
|
HSC replicate 1
|
| Sample_geo_accession | GSM463711
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463711/suppl/GSM463711.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463712 | GPL1261 |
|
HSC rep2
|
bone marrow derived HSC
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: hematopoieitic stem cells (HSC)
|
HSC replicate 2
|
| Sample_geo_accession | GSM463712
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463712/suppl/GSM463712.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463713 | GPL1261 |
|
HSC rep3
|
bone marrow derived HSC
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: hematopoieitic stem cells (HSC)
|
HSC replicate 3
|
| Sample_geo_accession | GSM463713
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463713/suppl/GSM463713.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463714 | GPL1261 |
|
MPP rep1
|
bone marrow derived MPP
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: multipotent progenitors (MPP)
|
MPP replicate 1
|
| Sample_geo_accession | GSM463714
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463714/suppl/GSM463714.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463715 | GPL1261 |
|
MPP rep2
|
bone marrow derived MPP
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: multipotent progenitors (MPP)
|
MPP replicate 2
|
| Sample_geo_accession | GSM463715
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463715/suppl/GSM463715.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463716 | GPL1261 |
|
MPP rep3
|
bone marrow derived MPP
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: multipotent progenitors (MPP)
|
MPP replicate 3
|
| Sample_geo_accession | GSM463716
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463716/suppl/GSM463716.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463717 | GPL1261 |
|
PreMegE rep1
|
bone marrow derived PreMegE
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: Pre-Megakaryocyte/Erythrocyte progenitors (PreMegE)
|
PreMegE replicate 1
|
| Sample_geo_accession | GSM463717
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463717/suppl/GSM463717.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463718 | GPL1261 |
|
PreMegE rep2
|
bone marrow derived PreMegE
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: Pre-Megakaryocyte/Erythrocyte progenitors (PreMegE)
|
PreMegE replicate 2
|
| Sample_geo_accession | GSM463718
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463718/suppl/GSM463718.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463719 | GPL1261 |
|
PreMegE rep3
|
bone marrow derived PreMegE
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: Pre-Megakaryocyte/Erythrocyte progenitors (PreMegE)
|
PreMegE replicate 3
|
| Sample_geo_accession | GSM463719
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463719/suppl/GSM463719.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463720 | GPL1261 |
|
PreMegE rep4
|
bone marrow derived PreMegE
|
strain: C57Bl/6
age: 10-12 week old
tissue: bone marrow
cell type: Pre-Megakaryocyte/Erythrocyte progenitors (PreMegE)
|
PreMegE replicate 3
|
| Sample_geo_accession | GSM463720
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463720/suppl/GSM463720.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
| | |
|
GSM463721 | GPL1261 |
|
CD4+ T cell rep1
|
spleen derived CD4+ T cell
|
strain: C57Bl/6
age: 10-12 week old
tissue: spleen
cell type: mature CD4+ T cells
|
CD4+ T cell replicate 1
|
| Sample_geo_accession | GSM463721
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463721/suppl/GSM463721.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
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GSM463722 | GPL1261 |
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CD4+ T cell rep2
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spleen derived CD4+ T cell
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strain: C57Bl/6
age: 10-12 week old
tissue: spleen
cell type: mature CD4+ T cells
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CD4+ T cell replicate 2
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| Sample_geo_accession | GSM463722
| | Sample_status | Public on Nov 09 2009
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | HSCs and MPPs were FACS sorted from the bone marrow of 10-12 week old C57Bl/6 mice
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Microkit (Qiagen, USA) and genomic DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the SciBlue Facilty, Lund University.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed by Lund University and Linköping University Array facilities
| | Sample_hyb_protocol | Hybridization was performed by Lund University and Linköping University Array facilities
| | Sample_scan_protocol | Scanning was performed by Lund University and Linköping University Array facilities
| | Sample_data_processing | The raw data was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) and quantile normalization (Bolstad et al. Bioinformatics 19(2):185)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joanne,,Attema
| | Sample_contact_email | Joanne.Attema@med.lu.se
| | Sample_contact_laboratory | BMC D14
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Tornavagen 10
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 22184
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463722/suppl/GSM463722.CEL.gz
| | Sample_series_id | GSE18669
| | Sample_series_id | GSE18737
| | Sample_data_row_count | 45101
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