Search results for the GEO ID: GSE18674  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM463920 | GPL570 |
|
BoneMarrow
|
pooled Human bone marrow total RNA
|
tissue: bone marrow
ethnicity: caucasian
|
Gene expression data of Human bone marrow
|
| Sample_geo_accession | GSM463920
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463920/suppl/GSM463920.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837750
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463921 | GPL570 |
|
Cerebellum
|
pooled Human cerebellum total RNA
|
tissue: cerebellum
ethnicity: caucasian
|
Gene expression data of Human cerebellum
|
| Sample_geo_accession | GSM463921
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463921/suppl/GSM463921.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837751
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463922 | GPL570 |
|
Colon
|
pooled Human colon total RNA
|
tissue: colon
ethnicity: caucasian
|
Gene expression data of Human colon
|
| Sample_geo_accession | GSM463922
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463922/suppl/GSM463922.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837752
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463923 | GPL570 |
|
Cortex
|
pooled Human cortex total RNA
|
tissue: cortex
ethnicity: caucasian
|
Gene expression data of Human cortex
|
| Sample_geo_accession | GSM463923
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463923/suppl/GSM463923.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837753
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463924 | GPL570 |
|
FetalBrain
|
pooled Human fetal brain total RNA
|
tissue: fetal brain
ethnicity: caucasian
|
Gene expression data of Human fetal brain
|
| Sample_geo_accession | GSM463924
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463924/suppl/GSM463924.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837754
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463925 | GPL570 |
|
Heart
|
pooled Human heart total RNA
|
tissue: heart
ethnicity: caucasian
|
Gene expression data of Human heart
|
| Sample_geo_accession | GSM463925
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463925/suppl/GSM463925.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837755
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463926 | GPL570 |
|
Kidney
|
pooled Human kidney total RNA
|
tissue: kidney
ethnicity: caucasian
|
Gene expression data of Human kidney
|
| Sample_geo_accession | GSM463926
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463926/suppl/GSM463926.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837756
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463927 | GPL570 |
|
Liver
|
pooled Human liver total RNA
|
tissue: liver
ethnicity: caucasian
|
Gene expression data of Human liver
|
| Sample_geo_accession | GSM463927
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463927/suppl/GSM463927.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837757
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463928 | GPL570 |
|
Lung
|
pooled Human lung total RNA
|
tissue: lung
ethnicity: caucasian
|
Gene expression data of Human lung
|
| Sample_geo_accession | GSM463928
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463928/suppl/GSM463928.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837758
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463929 | GPL570 |
|
Pancreas
|
pooled Human pancreas total RNA
|
tissue: pancreas
ethnicity: caucasian
|
Gene expression data of Human pancreas
|
| Sample_geo_accession | GSM463929
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463929/suppl/GSM463929.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837759
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463930 | GPL570 |
|
Prostate
|
pooled Human prostate total RNA
|
tissue: prostate
ethnicity: caucasian
|
Gene expression data of Human prostate
|
| Sample_geo_accession | GSM463930
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463930/suppl/GSM463930.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837760
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463931 | GPL570 |
|
SalivaryGland
|
pooled Human salivary gland total RNA
|
tissue: salivary gland
ethnicity: caucasian
|
Gene expression data of Human salivary gland
|
| Sample_geo_accession | GSM463931
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463931/suppl/GSM463931.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837761
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463932 | GPL570 |
|
SkeletalMuscle
|
pooled Human skeletal muscle total RNA
|
tissue: skeletal muscle
ethnicity: caucasian
|
Gene expression data of Human skeletal muscle
|
| Sample_geo_accession | GSM463932
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463932/suppl/GSM463932.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837762
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463933 | GPL570 |
|
SmallIntestine
|
pooled Human small intestine total RNA
|
tissue: small intestine
ethnicity: caucasian
|
Gene expression data of Human small intestine
|
| Sample_geo_accession | GSM463933
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463933/suppl/GSM463933.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837763
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463934 | GPL570 |
|
SpinalCord
|
pooled Human spinal cord total RNA
|
tissue: spinal cord
ethnicity: caucasian
|
Gene expression data of Human spinal cord
|
| Sample_geo_accession | GSM463934
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463934/suppl/GSM463934.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837764
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463935 | GPL570 |
|
Spleen
|
pooled Human spleen total RNA
|
tissue: spleen
ethnicity: caucasian
|
Gene expression data of Human spleen
|
| Sample_geo_accession | GSM463935
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463935/suppl/GSM463935.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837765
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463936 | GPL570 |
|
Stomach
|
pooled Human stomach total RNA
|
tissue: stomach
ethnicity: caucasian
|
Gene expression data of Human stomach
|
| Sample_geo_accession | GSM463936
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463936/suppl/GSM463936.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837766
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463937 | GPL570 |
|
Testes
|
pooled Human testes total RNA
|
tissue: testes
ethnicity: caucasian
|
Gene expression data of Human testes
|
| Sample_geo_accession | GSM463937
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463937/suppl/GSM463937.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837767
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463938 | GPL570 |
|
Thymus
|
pooled Human thymus total RNA
|
tissue: thymus
ethnicity: caucasian
|
Gene expression data of Human thymus
|
| Sample_geo_accession | GSM463938
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463938/suppl/GSM463938.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837768
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463939 | GPL570 |
|
Thyroid
|
pooled Human thyroid total RNA
|
tissue: thyroid
ethnicity: caucasian
|
Gene expression data of Human thyroid
|
| Sample_geo_accession | GSM463939
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463939/suppl/GSM463939.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837769
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463940 | GPL570 |
|
Trachea
|
pooled Human trachea total RNA
|
tissue: trachea
ethnicity: caucasian
|
Gene expression data of Human trachea
|
| Sample_geo_accession | GSM463940
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463940/suppl/GSM463940.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837770
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463941 | GPL570 |
|
Uterus
|
pooled Human uterus total RNA
|
tissue: uterus
ethnicity: caucasian
|
Gene expression data of Human uterus
|
| Sample_geo_accession | GSM463941
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463941/suppl/GSM463941.CEL.gz
| | Sample_relation | Reanalyzed by: GSM837771
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463942 | GPL570 |
|
HeLa
|
Human HeLa cells total RNA
|
cell line: HeLa cells
|
Gene expression data of Human HeLa cells
|
| Sample_geo_accession | GSM463942
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463942/suppl/GSM463942.CEL.gz
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
GSM463943 | GPL570 |
|
SHSY5Y
|
Human SH-SY5Y cells total RNA
|
cell line: SH-SY5Y cells
|
Gene expression data of Human SH-SY5Y cells
|
| Sample_geo_accession | GSM463943
| | Sample_status | Public on Nov 12 2012
| | Sample_submission_date | Oct 21 2009
| | Sample_last_update_date | Nov 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples of total RNA from Human tissues were purchased from several companies (Clontech, Ambion, Stratagene, Cell Applications). HeLa and SH-SY5Y cells were cultured in standard DMEM / 10% FBS medium. Total RNA was extracted from cells with TRIzol regent (Invitrogen). Additionally, total RNA was purified with Rneasy Mini Kit (Qiagen) and treated with RNase-free DNase Set (Qiagen) to remove any contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, Rev. 3, 2009, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with MAS5 and quantile normalization using R software.
| | Sample_data_processing | MAS5 and quantile normalization signal intensity. Note that the intensities were converted to a logarithmic scale (base 2). The call in an absolute analysis by MAS5call that indicates if the transcript was present (P), marginal (M) or absent (A).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Fuyuki,,Miya
| | Sample_contact_email | miya@src.riken.jp
| | Sample_contact_phone | +81-45-503-9556
| | Sample_contact_fax | +81-45-503-9555
| | Sample_contact_laboratory | Laboratory for Medical Informatics
| | Sample_contact_department | Center for Genomic Medicine
| | Sample_contact_institute | RIKEN
| | Sample_contact_address | 1-7-22 Suehiro, Tsurumi-ku
| | Sample_contact_city | Yokohama
| | Sample_contact_state | Kanagawa
| | Sample_contact_zip/postal_code | 230-0045
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://www.src.riken.jp/english/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM463nnn/GSM463943/suppl/GSM463943.CEL.gz
| | Sample_series_id | GSE18674
| | Sample_series_id | GSE18676
| | Sample_data_row_count | 54675
| | |
|
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