Search results for the GEO ID: GSE18745 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM465509 | GPL1261 |
|
Sample M535
|
M535_WT
|
strain: C57BL6 X 129sv mixed
tissue: liver
genotype: WT
|
M535
|
Sample_geo_accession | GSM465509
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Oct 26 2009
| Sample_last_update_date | Apr 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_growth_protocol_ch1 | NIDDK/NIH core lab growth protocol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard label protocol.
| Sample_hyb_protocol | Affymetrix standard hybridization protocol.
| Sample_scan_protocol | Affymetrix standard scan protocol.
| Sample_data_processing | MAS5.
| Sample_platform_id | GPL1261
| Sample_contact_name | WeiPing,,Chen
| Sample_contact_email | weipingChen@niddk.nih.gov
| Sample_contact_phone | 301-496-0175
| Sample_contact_laboratory | Microarray Core Lab
| Sample_contact_department | MCL
| Sample_contact_institute | NIDDK/NIH
| Sample_contact_address | Bldg 8, Room 1A11, NIDDK/NIH
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465509/suppl/GSM465509.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465509/suppl/GSM465509.CHP.gz
| Sample_series_id | GSE18745
| Sample_data_row_count | 45101
| |
|
GSM465510 | GPL1261 |
|
Sample M537
|
M537_KO
|
strain: C57BL6 X 129sv mixed
tissue: liver
genotype: sphingosine-1-phosphate (S1P) lyase knock-out
|
M537
|
Sample_geo_accession | GSM465510
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Oct 26 2009
| Sample_last_update_date | Apr 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_growth_protocol_ch1 | NIDDK/NIH core lab growth protocol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard label protocol.
| Sample_hyb_protocol | Affymetrix standard hybridization protocol.
| Sample_scan_protocol | Affymetrix standard scan protocol.
| Sample_data_processing | MAS5.
| Sample_platform_id | GPL1261
| Sample_contact_name | WeiPing,,Chen
| Sample_contact_email | weipingChen@niddk.nih.gov
| Sample_contact_phone | 301-496-0175
| Sample_contact_laboratory | Microarray Core Lab
| Sample_contact_department | MCL
| Sample_contact_institute | NIDDK/NIH
| Sample_contact_address | Bldg 8, Room 1A11, NIDDK/NIH
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465510/suppl/GSM465510.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465510/suppl/GSM465510.CHP.gz
| Sample_series_id | GSE18745
| Sample_data_row_count | 45101
| |
|
GSM465511 | GPL1261 |
|
Sample M539
|
M539_KO
|
strain: C57BL6 X 129sv mixed
tissue: liver
genotype: sphingosine-1-phosphate (S1P) lyase knock-out
|
M539
|
Sample_geo_accession | GSM465511
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Oct 26 2009
| Sample_last_update_date | Apr 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_growth_protocol_ch1 | NIDDK/NIH core lab growth protocol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard label protocol.
| Sample_hyb_protocol | Affymetrix standard hybridization protocol.
| Sample_scan_protocol | Affymetrix standard scan protocol.
| Sample_data_processing | MAS5.
| Sample_platform_id | GPL1261
| Sample_contact_name | WeiPing,,Chen
| Sample_contact_email | weipingChen@niddk.nih.gov
| Sample_contact_phone | 301-496-0175
| Sample_contact_laboratory | Microarray Core Lab
| Sample_contact_department | MCL
| Sample_contact_institute | NIDDK/NIH
| Sample_contact_address | Bldg 8, Room 1A11, NIDDK/NIH
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465511/suppl/GSM465511.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465511/suppl/GSM465511.CHP.gz
| Sample_series_id | GSE18745
| Sample_data_row_count | 45101
| |
|
GSM465512 | GPL1261 |
|
Sample M548
|
M548_WT
|
strain: C57BL6 X 129sv mixed
tissue: liver
genotype: WT
|
M548
|
Sample_geo_accession | GSM465512
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Oct 26 2009
| Sample_last_update_date | Apr 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_growth_protocol_ch1 | NIDDK/NIH core lab growth protocol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard label protocol.
| Sample_hyb_protocol | Affymetrix standard hybridization protocol.
| Sample_scan_protocol | Affymetrix standard scan protocol.
| Sample_data_processing | MAS5.
| Sample_platform_id | GPL1261
| Sample_contact_name | WeiPing,,Chen
| Sample_contact_email | weipingChen@niddk.nih.gov
| Sample_contact_phone | 301-496-0175
| Sample_contact_laboratory | Microarray Core Lab
| Sample_contact_department | MCL
| Sample_contact_institute | NIDDK/NIH
| Sample_contact_address | Bldg 8, Room 1A11, NIDDK/NIH
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465512/suppl/GSM465512.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465512/suppl/GSM465512.CHP.gz
| Sample_series_id | GSE18745
| Sample_data_row_count | 45101
| |
|
GSM465513 | GPL1261 |
|
Sample M558
|
M558_KO
|
strain: C57BL6 X 129sv mixed
tissue: liver
genotype: sphingosine-1-phosphate (S1P) lyase knock-out
|
M558
|
Sample_geo_accession | GSM465513
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Oct 26 2009
| Sample_last_update_date | Apr 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_growth_protocol_ch1 | NIDDK/NIH core lab growth protocol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard label protocol.
| Sample_hyb_protocol | Affymetrix standard hybridization protocol.
| Sample_scan_protocol | Affymetrix standard scan protocol.
| Sample_data_processing | MAS5.
| Sample_platform_id | GPL1261
| Sample_contact_name | WeiPing,,Chen
| Sample_contact_email | weipingChen@niddk.nih.gov
| Sample_contact_phone | 301-496-0175
| Sample_contact_laboratory | Microarray Core Lab
| Sample_contact_department | MCL
| Sample_contact_institute | NIDDK/NIH
| Sample_contact_address | Bldg 8, Room 1A11, NIDDK/NIH
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465513/suppl/GSM465513.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465513/suppl/GSM465513.CHP.gz
| Sample_series_id | GSE18745
| Sample_data_row_count | 45101
| |
|
GSM465514 | GPL1261 |
|
Sample M559
|
M559_WT
|
strain: C57BL6 X 129sv mixed
tissue: liver
genotype: WT
|
M559
|
Sample_geo_accession | GSM465514
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Oct 26 2009
| Sample_last_update_date | Apr 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | None.
| Sample_growth_protocol_ch1 | NIDDK/NIH core lab growth protocol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIzol reagent.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard label protocol.
| Sample_hyb_protocol | Affymetrix standard hybridization protocol.
| Sample_scan_protocol | Affymetrix standard scan protocol.
| Sample_data_processing | MAS5.
| Sample_platform_id | GPL1261
| Sample_contact_name | WeiPing,,Chen
| Sample_contact_email | weipingChen@niddk.nih.gov
| Sample_contact_phone | 301-496-0175
| Sample_contact_laboratory | Microarray Core Lab
| Sample_contact_department | MCL
| Sample_contact_institute | NIDDK/NIH
| Sample_contact_address | Bldg 8, Room 1A11, NIDDK/NIH
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465514/suppl/GSM465514.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM465nnn/GSM465514/suppl/GSM465514.CHP.gz
| Sample_series_id | GSE18745
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|