Search results for the GEO ID: GSE18853 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM467154 | GPL1261 |
|
WT KSL1
|
Wild-type KSL
|
tissue: Hematopoietic stem/progenitor cells
genotype: Wild type
developmental stage: post-tranplantation BM
|
Gene expression data from wild-type KSL hematopoietic stem/progenitor cells from recipient mouse bone marrow post-transplantation
|
Sample_geo_accession | GSM467154
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 02 2009
| Sample_last_update_date | Nov 02 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from the purified total RNA equivalent to 10,000 cells according to the standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix Protocol
| Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | ATSUSHI,,IWAMA
| Sample_contact_email | aiwama@faculty.chiba-u.jp
| Sample_contact_phone | 81-43-226-2187
| Sample_contact_fax | 81-43-226-2191
| Sample_contact_department | Department of Cellular and Molecular Medicine
| Sample_contact_institute | Graduate School of Medicine, Chiba University
| Sample_contact_address | 1-8-1 Inohana, Chuo-ku
| Sample_contact_city | Chiba
| Sample_contact_zip/postal_code | 260-8670
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467154/suppl/GSM467154.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467154/suppl/GSM467154.CHP.gz
| Sample_series_id | GSE18853
| Sample_data_row_count | 45101
| |
|
GSM467155 | GPL1261 |
|
WT KSL2
|
Wild-type KSL
|
tissue: Hematopoietic stem/progenitor cells
genotype: Wild type
developmental stage: post-tranplantation BM
|
Gene expression data from wild-type KSL hematopoietic stem/progenitor cells from recipient mouse bone marrow post-transplantation
|
Sample_geo_accession | GSM467155
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 02 2009
| Sample_last_update_date | Nov 02 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from the purified total RNA equivalent to 10,000 cells according to the standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix Protocol
| Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | ATSUSHI,,IWAMA
| Sample_contact_email | aiwama@faculty.chiba-u.jp
| Sample_contact_phone | 81-43-226-2187
| Sample_contact_fax | 81-43-226-2191
| Sample_contact_department | Department of Cellular and Molecular Medicine
| Sample_contact_institute | Graduate School of Medicine, Chiba University
| Sample_contact_address | 1-8-1 Inohana, Chuo-ku
| Sample_contact_city | Chiba
| Sample_contact_zip/postal_code | 260-8670
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467155/suppl/GSM467155.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467155/suppl/GSM467155.CHP.gz
| Sample_series_id | GSE18853
| Sample_data_row_count | 45101
| |
|
GSM467156 | GPL1261 |
|
Fus KSL1
|
Fus-/- KSL
|
tissue: Hematopoietic stem/progenitor cells
genotype: Fus-null
developmental stage: post-tranplantation BM
|
Gene expression data from Fus-/- KSL hematopoietic stem/progenitor cells from recipient mouse bone marrow post-transplantation
|
Sample_geo_accession | GSM467156
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 02 2009
| Sample_last_update_date | Nov 02 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from the purified total RNA equivalent to 10,000 cells according to the standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix Protocol
| Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | ATSUSHI,,IWAMA
| Sample_contact_email | aiwama@faculty.chiba-u.jp
| Sample_contact_phone | 81-43-226-2187
| Sample_contact_fax | 81-43-226-2191
| Sample_contact_department | Department of Cellular and Molecular Medicine
| Sample_contact_institute | Graduate School of Medicine, Chiba University
| Sample_contact_address | 1-8-1 Inohana, Chuo-ku
| Sample_contact_city | Chiba
| Sample_contact_zip/postal_code | 260-8670
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467156/suppl/GSM467156.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467156/suppl/GSM467156.CHP.gz
| Sample_series_id | GSE18853
| Sample_data_row_count | 45101
| |
|
GSM467157 | GPL1261 |
|
Fus KSL2
|
Fus-/- KSL
|
tissue: Hematopoietic stem/progenitor cells
genotype: Fus-null
developmental stage: post-tranplantation BM
|
Gene expression data from Fus-/- KSL hematopoietic stem/progenitor cells from recipient mouse bone marrow post-transplantation
|
Sample_geo_accession | GSM467157
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 02 2009
| Sample_last_update_date | Nov 02 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from the purified total RNA equivalent to 10,000 cells according to the standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix Protocol
| Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | ATSUSHI,,IWAMA
| Sample_contact_email | aiwama@faculty.chiba-u.jp
| Sample_contact_phone | 81-43-226-2187
| Sample_contact_fax | 81-43-226-2191
| Sample_contact_department | Department of Cellular and Molecular Medicine
| Sample_contact_institute | Graduate School of Medicine, Chiba University
| Sample_contact_address | 1-8-1 Inohana, Chuo-ku
| Sample_contact_city | Chiba
| Sample_contact_zip/postal_code | 260-8670
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467157/suppl/GSM467157.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM467nnn/GSM467157/suppl/GSM467157.CHP.gz
| Sample_series_id | GSE18853
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|