Search results for the GEO ID: GSE18896  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM468287 | GPL339 |
|
wildtype brain neonatal replicate1
|
brain
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: brain
genotype: wildtype
|
neonatal brain tissue from wild type mice
|
| Sample_geo_accession | GSM468287
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468287/suppl/GSM468287_RTP002384.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468288 | GPL339 |
|
wildtype brain neonatal replicate2
|
brain
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: brain
genotype: wildtype
|
neonatal brain tissue from wild type mice
|
| Sample_geo_accession | GSM468288
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468288/suppl/GSM468288_RTP002385.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468289 | GPL339 |
|
wildtype brain neonatal replicate3
|
brain
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: brain
genotype: wildtype
|
neonatal brain tissue from wild type mice
|
| Sample_geo_accession | GSM468289
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468289/suppl/GSM468289_RTP002386.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468290 | GPL339 |
|
knockout brain neonatal replicate1
|
brain
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: brain
genotype: ERRγ null
|
neonatal brain tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468290
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468290/suppl/GSM468290_RTP002387.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468291 | GPL339 |
|
knockout brain neonatal replicate2
|
brain
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: brain
genotype: ERRγ null
|
neonatal brain tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468291
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468291/suppl/GSM468291_RTP002388.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468292 | GPL339 |
|
knockout brain neonatal replicate3
|
brain
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: brain
genotype: ERRγ null
|
neonatal brain tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468292
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468292/suppl/GSM468292_RTP002389.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468293 | GPL339 |
|
wildtype kidney neonatal replicate1
|
kidney
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: kidney
genotype: wildtype
|
neonatal kidney tissue from wild type mice
|
| Sample_geo_accession | GSM468293
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468293/suppl/GSM468293_RTP002390.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468294 | GPL339 |
|
wildtype kidney neonatal replicate2
|
kidney
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: kidney
genotype: wildtype
|
neonatal kidney tissue from wild type mice
|
| Sample_geo_accession | GSM468294
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468294/suppl/GSM468294_RTP002391.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468295 | GPL339 |
|
wildtype kidney neonatal replicate3
|
kidney
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: kidney
genotype: wildtype
|
neonatal kidney tissue from wild type mice
|
| Sample_geo_accession | GSM468295
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468295/suppl/GSM468295_RTP002392.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468296 | GPL339 |
|
knockout kidney neonatal replicate1
|
kidney
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: kidney
genotype: ERRγ null
|
neonatal kidney tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468296
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468296/suppl/GSM468296_RTP002393.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468297 | GPL339 |
|
knockout kidney neonatal replicate2
|
kidney
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: kidney
genotype: ERRγ null
|
neonatal kidney tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468297
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468297/suppl/GSM468297_RTP002394.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468298 | GPL339 |
|
knockout kidney neonatal replicate3
|
kidney
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: kidney
genotype: ERRγ null
|
neonatal kidney tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468298
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468298/suppl/GSM468298_RTP002395.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468299 | GPL339 |
|
wildtype stomach neonatal replicate1
|
stomach
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: stomach
genotype: wildtype
|
neonatal stomach tissue from wild type mice
|
| Sample_geo_accession | GSM468299
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468299/suppl/GSM468299_RTP002396.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468300 | GPL339 |
|
wildtype stomach neonatal replicate2
|
stomach
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: stomach
genotype: wildtype
|
neonatal stomach tissue from wild type mice
|
| Sample_geo_accession | GSM468300
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468300/suppl/GSM468300_RTP002397.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468301 | GPL339 |
|
wildtype stomach neonatal replicate3
|
stomach
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: stomach
genotype: wildtype
|
neonatal stomach tissue from wild type mice
|
| Sample_geo_accession | GSM468301
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468301/suppl/GSM468301_RTP002398.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468302 | GPL339 |
|
knockout stomach neonatal replicate1
|
stomach
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: stomach
genotype: ERRγ null
|
neonatal stomach tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468302
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468302/suppl/GSM468302_RTP002445.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468303 | GPL339 |
|
knockout stomach neonatal replicate2
|
stomach
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: stomach
genotype: ERRγ null
|
neonatal stomach tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468303
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468303/suppl/GSM468303_RTP002446.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468304 | GPL339 |
|
knockout stomach neonatal replicate3
|
stomach
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: stomach
genotype: ERRγ null
|
neonatal stomach tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468304
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468304/suppl/GSM468304_RTP002447.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468305 | GPL339 |
|
wildtype liver neonatal replicate1
|
liver
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: liver
genotype: wildtype
|
neonatal liver tissue from wild type mice
|
| Sample_geo_accession | GSM468305
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468305/suppl/GSM468305_RTP002448.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468306 | GPL339 |
|
wildtype liver neonatal replicate2
|
liver
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: liver
genotype: wildtype
|
neonatal liver tissue from wild type mice
|
| Sample_geo_accession | GSM468306
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468306/suppl/GSM468306_RTP002449.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468307 | GPL339 |
|
wildtype liver neonatal replicate3
|
liver
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: liver
genotype: wildtype
|
neonatal liver tissue from wild type mice
|
| Sample_geo_accession | GSM468307
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468307/suppl/GSM468307_RTP002450.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468308 | GPL339 |
|
knockout liver neonatal replicate1
|
liver
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: liver
genotype: ERRγ null
|
neonatal liver tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468308
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468308/suppl/GSM468308_RTP002451.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468309 | GPL339 |
|
knockout liver neonatal replicate2
|
liver
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: liver
genotype: ERRγ null
|
neonatal liver tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468309
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468309/suppl/GSM468309_RTP002452.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468310 | GPL339 |
|
knockout liver neonatal replicate3
|
liver
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: liver
genotype: ERRγ null
|
neonatal liver tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468310
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468310/suppl/GSM468310_RTP002453.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468311 | GPL339 |
|
wildtype salivary neonatal replicate1
|
salivary
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: salivary
genotype: wildtype
|
neonatal salivary tissue from wild type mice
|
| Sample_geo_accession | GSM468311
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468311/suppl/GSM468311_RTP002454.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468312 | GPL339 |
|
wildtype salivary neonatal replicate2
|
salivary
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: salivary
genotype: wildtype
|
neonatal salivary tissue from wild type mice
|
| Sample_geo_accession | GSM468312
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468312/suppl/GSM468312_RTP002455.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468313 | GPL339 |
|
wildtype salivary neonatal replicate3
|
salivary
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: salivary
genotype: wildtype
|
neonatal salivary tissue from wild type mice
|
| Sample_geo_accession | GSM468313
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468313/suppl/GSM468313_RTP002456.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468314 | GPL339 |
|
knockout salivary neonatal replicate1
|
salivary
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: salivary
genotype: ERRγ null
|
neonatal salivary tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468314
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468314/suppl/GSM468314_RTP002460.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468315 | GPL339 |
|
knockout salivary neonatal replicate2
|
salivary
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: salivary
genotype: ERRγ null
|
neonatal salivary tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468315
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468315/suppl/GSM468315_RTP002458.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
GSM468316 | GPL339 |
|
knockout salivary neonatal replicate3
|
salivary
|
genetic background: mixed SV129/C57BL/6
gender: unknown
age: neonatal
tissue: salivary
genotype: ERRγ null
|
neonatal salivary tissue from ERRγ null mice
|
| Sample_geo_accession | GSM468316
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 04 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Not applicable.
| | Sample_growth_protocol_ch1 | Mice were maintained on standard laboratory chow and allowed food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol, per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA labeling was carried out using standard Affymetrix protocols.
| | Sample_hyb_protocol | After fragmentation, labeled cRNA was hybridized to Affymetrix MOE430A expression arrays using standard Affymetrix protocols.
| | Sample_scan_protocol | Hybridized arrays were scanned using standard Affymetrix protocols.
| | Sample_data_processing | Data was normalized within MAS5.0. by using the global scaling option using all probe sets. Target intensity of each chip was set to 150 and the normalization factor for each chip was obtained as the factor required to convert the trimmed mean signal (2% trim from the top and bottom) for each chip to 150. Then the raw signal for each gene on that chip was multiplied by the normalization factor to obtain normalized gene signals.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Andrew ,,Billin
| | Sample_contact_email | andrew.n.billin@gsk.com
| | Sample_contact_institute | GlaxoSmithKline
| | Sample_contact_address | 5 Moore Drive
| | Sample_contact_city | Research Triangle Park
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468316/suppl/GSM468316_RTP002459.CEL.gz
| | Sample_series_id | GSE18896
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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