Search results for the GEO ID: GSE18906  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM468508 | GPL570 |
|
CD36+EPC-NS1-12h-rep1
|
NS1 transduced for 12h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468508
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468508/suppl/GSM468508.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468509 | GPL570 |
|
CD36+EPC-NS1-12h-rep2
|
NS1 transduced for 12h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468509
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468509/suppl/GSM468509.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468510 | GPL570 |
|
CD36+EPC-NS1-12h-rep3
|
NS1 transduced for 12h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468510
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468510/suppl/GSM468510.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468511 | GPL570 |
|
CD36+EPC-NS1-24h-rep1
|
NS1 transduced for 24h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468511
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468511/suppl/GSM468511.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468512 | GPL570 |
|
CD36+EPC-NS1-24h-rep2
|
NS1 transduced for 24h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468512
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468512/suppl/GSM468512.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468513 | GPL570 |
|
CD36+EPC-NS1-24h-rep3
|
NS1 transduced for 24h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468513
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468513/suppl/GSM468513.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468514 | GPL570 |
|
CD36+EPC-NS1-48h-rep1
|
NS1 transduced for 48h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468514
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468514/suppl/GSM468514.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468515 | GPL570 |
|
CD36+EPC-NS1-48h-rep2
|
NS1 transduced for 48h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468515
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468515/suppl/GSM468515.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468516 | GPL570 |
|
CD36+EPC-NS1-48h-rep3
|
NS1 transduced for 48h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468516
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468516/suppl/GSM468516.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468517 | GPL570 |
|
CD36+EPC-Control-12h-rep1
|
Control transduced for 12h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468517
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468517/suppl/GSM468517.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468518 | GPL570 |
|
CD36+EPC-Control-12h-rep2
|
Control transduced for 12h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468518
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468518/suppl/GSM468518.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468519 | GPL570 |
|
CD36+EPC-Control-12h-rep3
|
Control transduced for 12h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468519
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468519/suppl/GSM468519.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468520 | GPL570 |
|
CD36+EPC-Control-24h-rep1
|
Control transduced for 24h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468520
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468520/suppl/GSM468520.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468521 | GPL570 |
|
CD36+EPC-Control-24h-rep2
|
Control transduced for 24h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468521
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468521/suppl/GSM468521.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468522 | GPL570 |
|
CD36+EPC-Control-24h-rep3
|
Control transduced for 24h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468522
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468522/suppl/GSM468522.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468523 | GPL570 |
|
CD36+EPC-Control-48h-rep1
|
Control transduced for 48h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468523
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468523/suppl/GSM468523.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468524 | GPL570 |
|
CD36+EPC-Control-48h-rep2
|
Control transduced for 48h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468524
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468524/suppl/GSM468524.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
GSM468525 | GPL570 |
|
CD36+EPC-Control-48h-rep3
|
Control transduced for 48h
|
cell type: CD36+ Erythoid Progenitor Cells (EPCs)
|
CD36+ EPCs generated from CD34+ stem cells
|
| Sample_geo_accession | GSM468525
| | Sample_status | Public on Nov 03 2010
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Nov 05 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD36+ EPCs were transduced with NS1 or control-lentivirus, and harvested at different time point
| | Sample_growth_protocol_ch1 | CD36+ EPCs were generated form CD34+ stem cells and maintained in the AMEM contained several growth factors
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen miRNA extraction with minElute columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16h
| | Sample_scan_protocol | Affymetrix GeneChip scanner
| | Sample_data_processing | Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation (''S10 transform).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ning,,zhi
| | Sample_contact_email | zhin@nhlbi.nih.gov
| | Sample_contact_phone | 3014517137
| | Sample_contact_department | hematology
| | Sample_contact_institute | NIH
| | Sample_contact_address | 9000 Rockville Pike
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468525/suppl/GSM468525.CEL.gz
| | Sample_series_id | GSE18906
| | Sample_data_row_count | 54675
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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