Search results for the GEO ID: GSE18907  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM468528 | GPL1261 |
|
Lung Virgin 1
|
Lung of virgin mice, pool 1 of two mice
|
pregnancy: virgin
tissue: lung
|
LungV_1
|
| Sample_geo_accession | GSM468528
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468528/suppl/GSM468528.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468529 | GPL1261 |
|
Lung Virgin 2
|
Lung of virgin mice, pool 2 of two mice
|
pregnancy: virgin
tissue: lung
|
LungV_2
|
| Sample_geo_accession | GSM468529
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468529/suppl/GSM468529.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468530 | GPL1261 |
|
Lung Virgin 3
|
Lung of virgin mice, pool 3 of two mice
|
pregnancy: virgin
tissue: lung
|
LungV_3
|
| Sample_geo_accession | GSM468530
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468530/suppl/GSM468530.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468531 | GPL1261 |
|
Lung Pregnant 1
|
Lung of 16-day pregnant mice, pool 1 of two mice
|
pregnancy: pregnant
tissue: lung
|
LungP_1
|
| Sample_geo_accession | GSM468531
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468531/suppl/GSM468531.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468532 | GPL1261 |
|
Lung Pregnant 2
|
Lung of 16-day pregnant mice, pool 2 of two mice
|
pregnancy: pregnant
tissue: lung
|
LungP_2
|
| Sample_geo_accession | GSM468532
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468532/suppl/GSM468532.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468533 | GPL1261 |
|
Lung Pregnant 3
|
Lung of 16-day pregnant mice, pool 3 of two mice
|
pregnancy: pregnant
tissue: lung
|
LungP_3
|
| Sample_geo_accession | GSM468533
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468533/suppl/GSM468533.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468534 | GPL1261 |
|
Liver Virgin 1
|
Liver of virgin mice, pool 1 of two mice
|
pregnancy: virgin
tissue: liver
|
LiverV_1
|
| Sample_geo_accession | GSM468534
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468534/suppl/GSM468534.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468535 | GPL1261 |
|
Liver Virgin 2
|
Liver of virgin mice, pool 2 of two mice
|
pregnancy: virgin
tissue: liver
|
LiverV_2
|
| Sample_geo_accession | GSM468535
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468535/suppl/GSM468535.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468536 | GPL1261 |
|
Liver Virgin 3
|
Liver of virgin mice, pool 3 of two mice
|
pregnancy: virgin
tissue: liver
|
LiverV_3
|
| Sample_geo_accession | GSM468536
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468536/suppl/GSM468536.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468537 | GPL1261 |
|
Liver Pregnant 1
|
Liver of 16-day pregnant mice, pool 1 of two mice
|
pregnancy: pregnant
tissue: liver
|
LiverP_1
|
| Sample_geo_accession | GSM468537
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468537/suppl/GSM468537.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468538 | GPL1261 |
|
Liver Pregnant 2
|
Liver of 16-day pregnant mice, pool 2 of two mice
|
pregnancy: pregnant
tissue: liver
|
LiverP_2
|
| Sample_geo_accession | GSM468538
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468538/suppl/GSM468538.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
GSM468539 | GPL1261 |
|
Liver Pregnant 3
|
Liver of 16-day pregnant mice, pool 3 of two mice
|
pregnancy: pregnant
tissue: liver
|
LiverP_3
|
| Sample_geo_accession | GSM468539
| | Sample_status | Public on Mar 19 2011
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Mar 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lungs and livers of pregnant and virgin mice were ground in liquid nitrogen and the powder homogenated by resuspending in RLT lysis buffer
| | Sample_growth_protocol_ch1 | Female NOD/SCID mice were obtained from in house breeding at the ISREC mouse facility. Female mice were between 8 and 10 weeks old at the beginning of experiments. Pregnancy was timed by checking for vaginal plugs early mornings for 4 days after setting up breeding couples.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction was done using Qiagen RNAeasy Kit according to the manufacturer’s recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Normalization and background subtraction with RMA as implemented in the 'affy' package of Bioconductor
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Paolo,,Provero
| | Sample_contact_email | paolo.provero@gmail.com
| | Sample_contact_department | Genetics, Biology and Biochemistry
| | Sample_contact_institute | University of Turin
| | Sample_contact_address | Via Nizza 52
| | Sample_contact_city | Torino
| | Sample_contact_zip/postal_code | I-10100
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468539/suppl/GSM468539.CEL.gz
| | Sample_series_id | GSE18907
| | Sample_data_row_count | 45101
| | |
|
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