Search results for the GEO ID: GSE18948  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM469266 | GPL8300 |
|
Patient 18
|
blood
|
tissue type: blood
patient id: 18
age: 49
gender: M
histological response: NR
pasi (baseline): 23
pasi (after): 19.4
|
blood, Patient 18
|
| Sample_geo_accession | GSM469266
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469266/suppl/GSM469266.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469267 | GPL8300 |
|
Patient 9
|
blood
|
tissue type: blood
patient id: 9
age: 36
gender: M
histological response: R
pasi (baseline): 17.1
pasi (after): 2.3
|
blood, Patient 9
|
| Sample_geo_accession | GSM469267
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469267/suppl/GSM469267.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469268 | GPL8300 |
|
Patient 7
|
blood
|
tissue type: blood
patient id: 7
age: 29
gender: F
histological response: R
pasi (baseline): 16.8
pasi (after): 2
|
blood, Patient 7
|
| Sample_geo_accession | GSM469268
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469268/suppl/GSM469268.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469269 | GPL8300 |
|
Patient 20
|
blood
|
tissue type: blood
patient id: 20
age: 43
gender: M
histological response: R
pasi (baseline): 26.1
pasi (after): 19.3
|
blood, Patient 20
|
| Sample_geo_accession | GSM469269
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469269/suppl/GSM469269.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469270 | GPL8300 |
|
Patient 16
|
blood
|
tissue type: blood
patient id: 16
age: 59
gender: M
histological response: NR
pasi (baseline): 17.7
pasi (after): NA
|
blood, Patient 16
|
| Sample_geo_accession | GSM469270
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469270/suppl/GSM469270.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469271 | GPL8300 |
|
Patient 11
|
blood
|
tissue type: blood
patient id: 11
age: 44
gender: M
histological response: R
pasi (baseline): 35
pasi (after): 5.2
|
blood, Patient 11
|
| Sample_geo_accession | GSM469271
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469271/suppl/GSM469271.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469272 | GPL8300 |
|
Patient 1
|
blood
|
tissue type: blood
patient id: 1
age: 38
gender: M
histological response: NR
pasi (baseline): 9.3
pasi (after): 4.7
|
blood, Patient 1
|
| Sample_geo_accession | GSM469272
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469272/suppl/GSM469272.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469273 | GPL8300 |
|
Patient 3
|
blood
|
tissue type: blood
patient id: 3
age: 62
gender: M
histological response: R
pasi (baseline): 9.4
pasi (after): 3.8
|
blood, Patient 3
|
| Sample_geo_accession | GSM469273
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469273/suppl/GSM469273.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469274 | GPL8300 |
|
Patient 21
|
blood
|
tissue type: blood
patient id: 21
age: 68
gender: M
histological response: R
pasi (baseline): 17.1
pasi (after): 14.4
|
blood, Patient 21
|
| Sample_geo_accession | GSM469274
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469274/suppl/GSM469274.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469275 | GPL8300 |
|
Patient 19
|
blood
|
tissue type: blood
patient id: 19
age: 59
gender: M
histological response: NR
pasi (baseline): 43.2
pasi (after): 32.2
|
blood, Patient 19
|
| Sample_geo_accession | GSM469275
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469275/suppl/GSM469275.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469276 | GPL8300 |
|
Patient 13
|
blood
|
tissue type: blood
patient id: 13
age: 52
gender: M
histological response: NR
pasi (baseline): 6.8
pasi (after): 5.3
|
blood, Patient 13
|
| Sample_geo_accession | GSM469276
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469276/suppl/GSM469276.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469277 | GPL8300 |
|
Patient 17
|
blood
|
tissue type: blood
patient id: 17
age: 55
gender: M
histological response: NR
pasi (baseline): 34.3
pasi (after): 22.8
|
blood, Patient 17
|
| Sample_geo_accession | GSM469277
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469277/suppl/GSM469277.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469278 | GPL8300 |
|
Patient 6
|
blood
|
tissue type: blood
patient id: 6
age: 41
gender: M
histological response: R
pasi (baseline): 20.7
pasi (after): 5.9
|
blood, Patient 6
|
| Sample_geo_accession | GSM469278
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469278/suppl/GSM469278.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469279 | GPL8300 |
|
Patient 14
|
blood
|
tissue type: blood
patient id: 14
age: 45
gender: M
histological response: R
pasi (baseline): 17.1
pasi (after): 2.2
|
blood, Patient 14
|
| Sample_geo_accession | GSM469279
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469279/suppl/GSM469279.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469280 | GPL8300 |
|
Patient 5
|
blood
|
tissue type: blood
patient id: 5
age: 33
gender: M
histological response: NR
pasi (baseline): 6.1
pasi (after): 4.3
|
blood, Patient 5
|
| Sample_geo_accession | GSM469280
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469280/suppl/GSM469280.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
GSM469281 | GPL8300 |
|
Patient 2
|
blood
|
tissue type: blood
patient id: 2
age: 49
gender: M
histological response: R
pasi (baseline): 10.9
pasi (after): 2.7
|
blood, Patient 2
|
| Sample_geo_accession | GSM469281
| | Sample_status | Public on Dec 01 2009
| | Sample_submission_date | Nov 09 2009
| | Sample_last_update_date | Nov 09 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with moderate-to-severe psoriasis were treated with alefacept (7.5mg weekly i.v. x12 weeks)
| | Sample_growth_protocol_ch1 | Peripheral blood draws were taken before alefacept administration. PBMCs were isolated and stored at -80°C, until required
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from tissues frozen in liquid nitrogen using the RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | mRNA was isolated and converted to double-strand cDNA and then to biotinylated cRNA (BioArray High Yield RNA Transcription Labeling Kit, Enzo Biochem Inc., Farmingdale, NY)
| | Sample_hyb_protocol | After fragmentation and quality confirmation with the Affymetrix Test-3 Array, 15 g of the biotinylated cRNA was hybridized to Affymetrix Human Genome U95A GeneChips (12,000 probe sets) (Affymetrix Inc., Santa Clara, CA)
| | Sample_scan_protocol | HP GeneArray Scanner, Hewlett-Packard Company, Palo Alto, CA
| | Sample_data_processing | The data were normalized using gcrma package in R.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Mayte,,Suarez-Farinas
| | Sample_contact_email | farinam@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York ave
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10075
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469281/suppl/GSM469281.CEL.gz
| | Sample_series_id | GSE18948
| | Sample_data_row_count | 12625
| | |
|
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