Result

Search results for the GEO ID: GSE18997

(Click on the check boxes provided under "Select for analysis", to initiate grouping)

(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down)

GSM ID

GPL ID

Select for analysis

Title

Source name

Description

Characteristics

GSM469957

GPL570

Sc3_1

Spermatogonial presence in tubuli

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 3

Human testis Score 3 Replicate 1

Sample_geo_accession	GSM469957
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469957/suppl/GSM469957.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

GSM469958

GPL570

Sc3_2

Spermatogonial presence in tubuli

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 3

Human testis Score 3 Replicate 2

Sample_geo_accession	GSM469958
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469958/suppl/GSM469958.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

GSM469959

GPL570

Sc3_3

Spermatogonial presence in tubuli

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 3

Human testis Score 3 Replicate 3

Sample_geo_accession	GSM469959
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469959/suppl/GSM469959.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

GSM469960

GPL570

Sc2_1

Sertoli cell only syndrome

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 2

Human testis Score 2 Replicate 1

Sample_geo_accession	GSM469960
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469960/suppl/GSM469960.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

GSM469961

GPL570

Sc2_2

Sertoli cell only syndrome

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 2

Human testis Score 2 Replicate 2

Sample_geo_accession	GSM469961
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469961/suppl/GSM469961.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

GSM469962

GPL570

Sc2_3

Sertoli cell only syndrome

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 2

Human testis Score 2 Replicate 3

Sample_geo_accession	GSM469962
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469962/suppl/GSM469962.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

GSM469963

GPL570

Sc2_4

Sertoli cell only syndrome

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 2

Human testis Score 2 Replicate 4

Sample_geo_accession	GSM469963
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469963/suppl/GSM469963.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

GSM469964

GPL570

Sc2_5

Sertoli cell only syndrome

tissue type: testicular biopsy spermatogenic stage (johnsen score): Score 2

Human testis Score 2 Replicate 5

Sample_geo_accession	GSM469964
Sample_status	Public on Nov 13 2009
Sample_submission_date	Nov 12 2009
Sample_last_update_date	Nov 16 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Testicular biopsies were obtained with the 'open biopsy' method and immediately submerged in RNAlater (Ambion).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	RNA was extracted with RNAclean/RNApure (Biozym/Peqlab) by aid of an UltraTurrax and subsequently re-purified over RNeasy columns (Qiagen). RNA integrity was checked on a Bioanalyzer (Agilent).
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotin-labeled cRNA was synthesized following the Eukaryotic Sample and Array Processing Protocol (Affymetrix).
Sample_hyb_protocol	Hybridization cocktails containing fragmented cRNA at a concentration of 0.05 µg/µl were transferred to Human Genome U133 Plus 2.0 Array Gene Chips (Affymetrix) and incubated for 16h 60 rpm at 45°C on a rotator (Affymetrix). Arrays were washed and stained using a steptavidine-phycoerythrin conjugate. To increase signal strength, the antibody amplification protocol was used (EukGE-WS2v4)
Sample_scan_protocol	Arrays were scanned with a HP GeneArray Scanner (Affymetrix) by using default settings.
Sample_data_processing	DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). DAT image files of the microarrays were generated using Microarray Analysis Suite 5.0 (Affymetrix). RMA values from the affy package of www.bioconductor.org.
Sample_platform_id	GPL570
Sample_contact_name	Andrej-Nikolai,,Spiess
Sample_contact_email	a.spiess@uke.uni-hamburg.de
Sample_contact_phone	+49-40-42803-1585
Sample_contact_fax	+49-40-42803-1554
Sample_contact_laboratory	Molecular Andrology
Sample_contact_department	Andrology
Sample_contact_institute	University Hospital Hamburg-Eppendorf
Sample_contact_address	Martinistr. 52
Sample_contact_city	20246 Hamburg
Sample_contact_state	n/a
Sample_contact_zip/postal_code	n/a
Sample_contact_country	Germany
Sample_contact_web_link	www.dr-spiess.de
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM469nnn/GSM469964/suppl/GSM469964.CEL.gz
Sample_series_id	GSE18997
Sample_data_row_count	54613

Make groups for comparisons

(2 groups will be compared at a time)

Select GSMs and click on "Add groups"

Enter the group name here:

Select expression type

Transcripts profile based on;

A. Differential status (Up/Down regulation)

B. Absolute calls (Transcribed/Not-detected)

Filter results by number of probes