Search results for the GEO ID: GSE19004  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM470338 | GPL1261 |
|
triple knockout hepatocellular carcinoma - 1
|
triple Knock out (TKO) mouse
|
genome/variation: RbΔ/Δ; p130Δ/Δ; p107+/-
tissue: liver
disease status: hepatocellular carcinoma
|
Mouse HCCs tumors were dissected from TKO mice infected with Ad-Cre 4 months before via intrasplenic injection.
|
| Sample_geo_accession | GSM470338
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 12 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470338/suppl/GSM470338.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470338/suppl/GSM470338.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470520 | GPL1261 |
|
triple knockout hepatocellular carcinoma - 2
|
triple Knock out (TKO) mouse
|
genome/variation: RbΔ/Δ; p130Δ/Δ; p107+/-
tissue: liver
disease status: hepatocellular carcinoma
|
Mouse HCCs tumors were dissected from TKO mice infected with Ad-Cre 4 months before via intrasplenic injection.
|
| Sample_geo_accession | GSM470520
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470520/suppl/GSM470520.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470520/suppl/GSM470520.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470521 | GPL1261 |
|
triple knockout hepatocellular carcinoma - 3
|
triple Knock out (TKO) mouse
|
genome/variation: RbΔ/Δ; p130Δ/Δ; p107+/-
tissue: liver
disease status: hepatocellular carcinoma
|
Mouse HCCs tumors were dissected from TKO mice infected with Ad-Cre 4 months before via intrasplenic injection.
|
| Sample_geo_accession | GSM470521
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470521/suppl/GSM470521.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470521/suppl/GSM470521.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470522 | GPL1261 |
|
triple knockout hepatocellular carcinoma - 4
|
triple Knock out (TKO) mouse
|
genome/variation: RbΔ/Δ; p130Δ/Δ; p107+/-
tissue: liver
disease status: hepatocellular carcinoma
|
Mouse HCCs tumors were dissected from TKO mice infected with Ad-Cre 4 months before via intrasplenic injection.
|
| Sample_geo_accession | GSM470522
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470522/suppl/GSM470522.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470522/suppl/GSM470522.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470525 | GPL1261 |
|
triple knockout hepatocellular carcinoma - 5
|
triple knock out (TKO) mouse
|
genome/variation: RbΔ/Δ; p130Δ/Δ; p107+/-
tissue: liver
disease status: hepatocellular carcinoma
|
Mouse HCCs tumors were dissected from TKO mice infected with Ad-Cre 4 months before via intrasplenic injection.
|
| Sample_geo_accession | GSM470525
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470525/suppl/GSM470525.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470525/suppl/GSM470525.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470526 | GPL1261 |
|
normal liver -1
|
normal mouse
|
genome/variation: wild type
tissue: liver
disease status: control
|
Normal, tumor-free adult mouse liver.
|
| Sample_geo_accession | GSM470526
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470526/suppl/GSM470526.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470526/suppl/GSM470526.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470531 | GPL1261 |
|
normal liver - 2
|
normal mouse
|
genome/variation: wild type
tissue: liver
disease status: control
|
Normal, tumor-free adult mouse liver.
|
| Sample_geo_accession | GSM470531
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470531/suppl/GSM470531.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470531/suppl/GSM470531.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470532 | GPL1261 |
|
normal liver - 3
|
normal mouse
|
genome/variation: wild type
tissue: liver
disease status: control
|
Normal, tumor-free adult mouse liver.
|
| Sample_geo_accession | GSM470532
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470532/suppl/GSM470532.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470532/suppl/GSM470532.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
GSM470533 | GPL1261 |
|
normal liver - 4
|
normal mouse
|
genome/variation: wild type
tissue: liver
disease status: control
|
Normal, tumor-free adult mouse liver.
|
| Sample_geo_accession | GSM470533
| | Sample_status | Public on Jul 01 2010
| | Sample_submission_date | Nov 13 2009
| | Sample_last_update_date | Nov 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_label_ch1 | streptavidin
| | Sample_label_protocol_ch1 | RNA was isolated with Trizol and twice amplified with a RiboAmp RNA amplification kit.
| | Sample_hyb_protocol | Amplified cRNA was streptavidin-labeled, fragmented, and hybridized to Affymetrix 430-2.0 arrays as recommended by the manufacturer.
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA normalization was performed using Command Console ver1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470533/suppl/GSM470533.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM470nnn/GSM470533/suppl/GSM470533.chp.gz
| | Sample_series_id | GSE19004
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
