Search results for the GEO ID: GSE19139  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM474526 | GPL1261 |
|
EC-Control-24h-1
|
EC, endothelial cells
|
genetic background: C57BL/6J
cell type: cultured aortic endothelial cell
|
Staining with Fluidic Station 450 Protocol: EukGe-WS2v4
|
| Sample_geo_accession | GSM474526
| | Sample_status | Public on Nov 25 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Nov 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were feed 24h prior to stimulation, stimuli were
| | Sample_treatment_protocol_ch1 | added in PBS, Cells were supplemented with PBS only
| | Sample_growth_protocol_ch1 | EC Medium: DMEM +20% FBS, 2mM L-Glutamin, 1x Non-essential amino acids,
| | Sample_growth_protocol_ch1 | 1x Natriumpyruvat, 25mM HEPES (pH 7,0-7,6), 100µg/ml Heparin, 100µg/ml ECGS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Lipid Tissue Mini Kit, Standard protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | ENZO T7 High Yield Transcript Labelling Kit, 16h IVT
| | Sample_hyb_protocol | 60rpm, 18h, 45°C in Affymetrix Hybridization Buffer
| | Sample_scan_protocol | Affymetrix Scanner 3000, single scan
| | Sample_data_processing | GCOS 1.4, scaled to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Andreas,Johann Richard,Habenicht
| | Sample_contact_email | andreas.habenicht@mti.uni-jena.de
| | Sample_contact_phone | 49-3641-933306
| | Sample_contact_fax | 49-3641-933139
| | Sample_contact_laboratory | Institute Vascular Medicine
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Vascular Medicine
| | Sample_contact_address | Bachstr. 18
| | Sample_contact_city | Jena
| | Sample_contact_state | Thuringia
| | Sample_contact_zip/postal_code | 07743
| | Sample_contact_country | Germany
| | Sample_contact_web_link | www.med.uni-jena.de/ivm/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474526/suppl/GSM474526_EC_Control_24h_1.CEL.gz
| | Sample_series_id | GSE19139
| | Sample_data_row_count | 45101
| | |
|
GSM474527 | GPL1261 |
|
EC-Control-24h-2
|
EC, endothelial cells
|
genetic background: C57BL/6J
cell type: cultured aortic endothelial cell
|
Staining with Fluidic Station 450 Protocol: EukGe-WS2v4
|
| Sample_geo_accession | GSM474527
| | Sample_status | Public on Nov 25 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Nov 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were feed 24h prior to stimulation, stimuli were
| | Sample_treatment_protocol_ch1 | added in PBS, Cells were supplemented with PBS only
| | Sample_growth_protocol_ch1 | EC Medium: DMEM +20% FBS, 2mM L-Glutamin, 1x Non-essential amino acids,
| | Sample_growth_protocol_ch1 | 1x Natriumpyruvat, 25mM HEPES (pH 7,0-7,6), 100µg/ml Heparin, 100µg/ml ECGS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Lipid Tissue Mini Kit, Standard protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | ENZO T7 High Yield Transcript Labelling Kit, 16h IVT
| | Sample_hyb_protocol | 60rpm, 18h, 45°C in Affymetrix Hybridization Buffer
| | Sample_scan_protocol | Affymetrix Scanner 3000, single scan
| | Sample_data_processing | GCOS 1.4, scaled to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Andreas,Johann Richard,Habenicht
| | Sample_contact_email | andreas.habenicht@mti.uni-jena.de
| | Sample_contact_phone | 49-3641-933306
| | Sample_contact_fax | 49-3641-933139
| | Sample_contact_laboratory | Institute Vascular Medicine
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Vascular Medicine
| | Sample_contact_address | Bachstr. 18
| | Sample_contact_city | Jena
| | Sample_contact_state | Thuringia
| | Sample_contact_zip/postal_code | 07743
| | Sample_contact_country | Germany
| | Sample_contact_web_link | www.med.uni-jena.de/ivm/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474527/suppl/GSM474527_EC_Control_24h_2.CEL.gz
| | Sample_series_id | GSE19139
| | Sample_data_row_count | 45101
| | |
|
GSM474528 | GPL1261 |
|
EC-Control-24h-3
|
EC, endothelial cells
|
genetic background: C57BL/6J
cell type: cultured aortic endothelial cell
|
Staining with Fluidic Station 450 Protocol: EukGe-WS2v4
|
| Sample_geo_accession | GSM474528
| | Sample_status | Public on Nov 25 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Nov 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were feed 24h prior to stimulation, stimuli were
| | Sample_treatment_protocol_ch1 | added in PBS, Cells were supplemented with PBS only
| | Sample_growth_protocol_ch1 | EC Medium: DMEM +20% FBS, 2mM L-Glutamin, 1x Non-essential amino acids,
| | Sample_growth_protocol_ch1 | 1x Natriumpyruvat, 25mM HEPES (pH 7,0-7,6), 100µg/ml Heparin, 100µg/ml ECGS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Lipid Tissue Mini Kit, Standard protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | ENZO T7 High Yield Transcript Labelling Kit, 16h IVT
| | Sample_hyb_protocol | 60rpm, 18h, 45°C in Affymetrix Hybridization Buffer
| | Sample_scan_protocol | Affymetrix Scanner 3000, single scan
| | Sample_data_processing | GCOS 1.4, scaled to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Andreas,Johann Richard,Habenicht
| | Sample_contact_email | andreas.habenicht@mti.uni-jena.de
| | Sample_contact_phone | 49-3641-933306
| | Sample_contact_fax | 49-3641-933139
| | Sample_contact_laboratory | Institute Vascular Medicine
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Vascular Medicine
| | Sample_contact_address | Bachstr. 18
| | Sample_contact_city | Jena
| | Sample_contact_state | Thuringia
| | Sample_contact_zip/postal_code | 07743
| | Sample_contact_country | Germany
| | Sample_contact_web_link | www.med.uni-jena.de/ivm/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474528/suppl/GSM474528_EC_Control_24h_3.CEL.gz
| | Sample_series_id | GSE19139
| | Sample_data_row_count | 45101
| | |
|
GSM474529 | GPL1261 |
|
EC-TNF-LTBR-24h-1
|
EC, endothelial cells
|
genetic background: C57BL/6J
cell type: cultured aortic endothelial cell
|
Staining with Fluidic Station 450 Protocol: EukGe-WS2v4
|
| Sample_geo_accession | GSM474529
| | Sample_status | Public on Nov 25 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Nov 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were feed 24h prior to stimulation, stimuli were
| | Sample_treatment_protocol_ch1 | added in PBS, Cells were supplemented with PBS only
| | Sample_growth_protocol_ch1 | EC Medium: DMEM +20% FBS, 2mM L-Glutamin, 1x Non-essential amino acids,
| | Sample_growth_protocol_ch1 | 1x Natriumpyruvat, 25mM HEPES (pH 7,0-7,6), 100µg/ml Heparin, 100µg/ml ECGS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Lipid Tissue Mini Kit, Standard protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | ENZO T7 High Yield Transcript Labelling Kit, 16h IVT
| | Sample_hyb_protocol | 60rpm, 18h, 45°C in Affymetrix Hybridization Buffer
| | Sample_scan_protocol | Affymetrix Scanner 3000, single scan
| | Sample_data_processing | GCOS 1.4, scaled to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Andreas,Johann Richard,Habenicht
| | Sample_contact_email | andreas.habenicht@mti.uni-jena.de
| | Sample_contact_phone | 49-3641-933306
| | Sample_contact_fax | 49-3641-933139
| | Sample_contact_laboratory | Institute Vascular Medicine
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Vascular Medicine
| | Sample_contact_address | Bachstr. 18
| | Sample_contact_city | Jena
| | Sample_contact_state | Thuringia
| | Sample_contact_zip/postal_code | 07743
| | Sample_contact_country | Germany
| | Sample_contact_web_link | www.med.uni-jena.de/ivm/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474529/suppl/GSM474529_EC_TNF_LTBR_24h_1.CEL.gz
| | Sample_series_id | GSE19139
| | Sample_data_row_count | 45101
| | |
|
GSM474530 | GPL1261 |
|
EC-TNF-LTBR-24h-2
|
EC, endothelial cells
|
genetic background: C57BL/6J
cell type: cultured aortic endothelial cell
|
Staining with Fluidic Station 450 Protocol: EukGe-WS2v4
|
| Sample_geo_accession | GSM474530
| | Sample_status | Public on Nov 25 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Nov 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were feed 24h prior to stimulation, stimuli were
| | Sample_treatment_protocol_ch1 | added in PBS, Cells were supplemented with PBS only
| | Sample_growth_protocol_ch1 | EC Medium: DMEM +20% FBS, 2mM L-Glutamin, 1x Non-essential amino acids,
| | Sample_growth_protocol_ch1 | 1x Natriumpyruvat, 25mM HEPES (pH 7,0-7,6), 100µg/ml Heparin, 100µg/ml ECGS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Lipid Tissue Mini Kit, Standard protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | ENZO T7 High Yield Transcript Labelling Kit, 16h IVT
| | Sample_hyb_protocol | 60rpm, 18h, 45°C in Affymetrix Hybridization Buffer
| | Sample_scan_protocol | Affymetrix Scanner 3000, single scan
| | Sample_data_processing | GCOS 1.4, scaled to 500
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Andreas,Johann Richard,Habenicht
| | Sample_contact_email | andreas.habenicht@mti.uni-jena.de
| | Sample_contact_phone | 49-3641-933306
| | Sample_contact_fax | 49-3641-933139
| | Sample_contact_laboratory | Institute Vascular Medicine
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Vascular Medicine
| | Sample_contact_address | Bachstr. 18
| | Sample_contact_city | Jena
| | Sample_contact_state | Thuringia
| | Sample_contact_zip/postal_code | 07743
| | Sample_contact_country | Germany
| | Sample_contact_web_link | www.med.uni-jena.de/ivm/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474530/suppl/GSM474530_EC_TNF_LTBR_24h_2.CEL.gz
| | Sample_series_id | GSE19139
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
