Search results for the GEO ID: GSE19143  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM474593 | GPL96 |
|
Infant ALL PRED sensitive 1
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 1
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474593
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474593/suppl/GSM474593.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474593/suppl/GSM474593.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474594 | GPL96 |
|
Infant ALL PRED sensitive 2
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 2
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474594
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474594/suppl/GSM474594.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474594/suppl/GSM474594.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474595 | GPL96 |
|
Infant ALL PRED sensitive 3
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 3
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474595
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474595/suppl/GSM474595.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474595/suppl/GSM474595.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474596 | GPL96 |
|
Infant ALL PRED sensitive 4
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 4
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474596
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474596/suppl/GSM474596.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474596/suppl/GSM474596.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474597 | GPL96 |
|
Infant ALL PRED sensitive 5
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 5
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474597
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474597/suppl/GSM474597.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474597/suppl/GSM474597.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474598 | GPL96 |
|
Infant ALL PRED sensitive 6
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 6
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474598
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474598/suppl/GSM474598.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474598/suppl/GSM474598.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474599 | GPL96 |
|
Infant ALL PRED sensitive 7
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 7
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474599
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474599/suppl/GSM474599.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474599/suppl/GSM474599.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474600 | GPL96 |
|
Infant ALL PRED sensitive 8
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 8
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474600
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474600/suppl/GSM474600.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474600/suppl/GSM474600.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474601 | GPL96 |
|
Infant ALL PRED sensitive 9
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 9
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474601
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474601/suppl/GSM474601.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474601/suppl/GSM474601.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474602 | GPL96 |
|
Infant ALL PRED sensitive 10
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 10
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474602
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474602/suppl/GSM474602.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474602/suppl/GSM474602.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474603 | GPL96 |
|
Infant ALL PRED sensitive 11
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 11
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474603
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474603/suppl/GSM474603.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474603/suppl/GSM474603.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474604 | GPL96 |
|
Infant ALL PRED sensitive 12
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 12
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474604
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474604/suppl/GSM474604.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474604/suppl/GSM474604.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474605 | GPL96 |
|
Infant ALL PRED sensitive 13
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone sensisitve 13
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474605
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474605/suppl/GSM474605.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474605/suppl/GSM474605.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474606 | GPL96 |
|
Infant ALL PRED resistant 1
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 1
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474606
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474606/suppl/GSM474606.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474606/suppl/GSM474606.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474607 | GPL96 |
|
Infant ALL PRED resistant 2
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 2
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474607
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474607/suppl/GSM474607.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474607/suppl/GSM474607.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474608 | GPL96 |
|
Infant ALL PRED resistant 3
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 3
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474608
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474608/suppl/GSM474608.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474608/suppl/GSM474608.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474609 | GPL96 |
|
Infant ALL PRED resistant 4
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 4
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474609
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474609/suppl/GSM474609.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474609/suppl/GSM474609.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474610 | GPL96 |
|
Infant ALL PRED resistant 5
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 5
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474610
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474610/suppl/GSM474610.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474610/suppl/GSM474610.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474611 | GPL96 |
|
Infant ALL PRED resistant 6
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 6
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474611
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474611/suppl/GSM474611.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474611/suppl/GSM474611.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474612 | GPL96 |
|
Infant ALL PRED resistant 7
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 7
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474612
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474612/suppl/GSM474612.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474612/suppl/GSM474612.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474613 | GPL96 |
|
Infant ALL PRED resistant 8
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 8
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474613
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474613/suppl/GSM474613.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474613/suppl/GSM474613.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474614 | GPL96 |
|
Infant ALL PRED resistant 9
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 9
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474614
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474614/suppl/GSM474614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474614/suppl/GSM474614.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474615 | GPL96 |
|
Infant ALL PRED resistant 10
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 10
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474615
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474615/suppl/GSM474615.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474615/suppl/GSM474615.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474616 | GPL96 |
|
Infant ALL PRED resistant 11
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 11
|
sex: female
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474616
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474616/suppl/GSM474616.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474616/suppl/GSM474616.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474617 | GPL96 |
|
Infant ALL PRED resistant 12
|
Primary infant (<1 year of age) ALL cells in vitro prednisolone resistant 12
|
sex: male
developmental stage: Infant
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary infant ALL cells
|
| Sample_geo_accession | GSM474617
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474617/suppl/GSM474617.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474617/suppl/GSM474617.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474618 | GPL96 |
|
Non-infant ALL PRED sensitive 1
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 1
|
sex: female
developmental stage: Child
age: <1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474618
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474618/suppl/GSM474618.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474618/suppl/GSM474618.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474619 | GPL96 |
|
Non-infant ALL PRED sensitive 2
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 2
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474619
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474619/suppl/GSM474619.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474619/suppl/GSM474619.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474620 | GPL96 |
|
Non-infant ALL PRED sensitive 3
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 3
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474620
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474620/suppl/GSM474620.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474620/suppl/GSM474620.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474621 | GPL96 |
|
Non-infant ALL PRED sensitive 4
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 4
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474621
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474621/suppl/GSM474621.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474621/suppl/GSM474621.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474622 | GPL96 |
|
Non-infant ALL PRED sensitive 5
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 5
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474622
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474622/suppl/GSM474622.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474622/suppl/GSM474622.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474623 | GPL96 |
|
Non-infant ALL PRED sensitive 6
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 6
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474623
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474623/suppl/GSM474623.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474623/suppl/GSM474623.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474624 | GPL96 |
|
Non-infant ALL PRED sensitive 7
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 7
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474624
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474624/suppl/GSM474624.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474624/suppl/GSM474624.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474625 | GPL96 |
|
Non-infant ALL PRED sensitive 8
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 8
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474625
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474625/suppl/GSM474625.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474625/suppl/GSM474625.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474626 | GPL96 |
|
Non-infant ALL PRED sensitive 9
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 9
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474626
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474626/suppl/GSM474626.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474626/suppl/GSM474626.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474627 | GPL96 |
|
Non-infant ALL PRED sensitive 10
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 10
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474627
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474627/suppl/GSM474627.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474627/suppl/GSM474627.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474628 | GPL96 |
|
Non-infant ALL PRED sensitive 11
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 11
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474628
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474628/suppl/GSM474628.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474628/suppl/GSM474628.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474629 | GPL96 |
|
Non-infant ALL PRED sensitive 12
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 12
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474629
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474629/suppl/GSM474629.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474629/suppl/GSM474629.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474630 | GPL96 |
|
Non-infant ALL PRED sensitive 13
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 13
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474630
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474630/suppl/GSM474630.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474630/suppl/GSM474630.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474631 | GPL96 |
|
Non-infant ALL PRED sensitive 14
|
Primary non-infant (childhood) ALL cells in vitro prednisolone sensitive 14
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone sensitive
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474631
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474631/suppl/GSM474631.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474631/suppl/GSM474631.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474632 | GPL96 |
|
Non-infant ALL PRED resistant 1
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 1
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474632
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474632/suppl/GSM474632.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474632/suppl/GSM474632.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474633 | GPL96 |
|
Non-infant ALL PRED resistant 2
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 2
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474633
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474633/suppl/GSM474633.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474633/suppl/GSM474633.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474634 | GPL96 |
|
Non-infant ALL PRED resistant 3
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 3
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474634
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474634/suppl/GSM474634.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474634/suppl/GSM474634.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474635 | GPL96 |
|
Non-infant ALL PRED resistant 4
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 4
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474635
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474635/suppl/GSM474635.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474635/suppl/GSM474635.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474636 | GPL96 |
|
Non-infant ALL PRED resistant 5
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 5
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474636
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474636/suppl/GSM474636.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474636/suppl/GSM474636.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474637 | GPL96 |
|
Non-infant ALL PRED resistant 6
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 6
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474637
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474637/suppl/GSM474637.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474637/suppl/GSM474637.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474638 | GPL96 |
|
Non-infant ALL PRED resistant 7
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 7
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474638
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474638/suppl/GSM474638.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474638/suppl/GSM474638.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474639 | GPL96 |
|
Non-infant ALL PRED resistant 8
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 8
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474639
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474639/suppl/GSM474639.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474639/suppl/GSM474639.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474640 | GPL96 |
|
Non-infant ALL PRED resistant 9
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 9
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474640
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474640/suppl/GSM474640.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474640/suppl/GSM474640.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474641 | GPL96 |
|
Non-infant ALL PRED resistant 10
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 10
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474641
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474641/suppl/GSM474641.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474641/suppl/GSM474641.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474642 | GPL96 |
|
Non-infant ALL PRED resistant 11
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 11
|
sex: male
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474642
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474642/suppl/GSM474642.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474642/suppl/GSM474642.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474643 | GPL96 |
|
Non-infant ALL PRED resistant 12
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 12
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474643
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474643/suppl/GSM474643.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474643/suppl/GSM474643.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
GSM474644 | GPL96 |
|
Non-infant ALL PRED resistant 13
|
Primary non-infant (childhood) ALL cells in vitro prednisolone resistant 13
|
sex: female
developmental stage: Child
age: >1 year old
cell type: Precursor B-cells
disease status: acute lymphoblastic leukemia (ALL)
clinical response factor: prednisolone resistant
|
Gene expression data primary childhood ALL cells
|
| Sample_geo_accession | GSM474644
| | Sample_status | Public on Dec 16 2009
| | Sample_submission_date | Nov 23 2009
| | Sample_last_update_date | Dec 15 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Primary ALL samples were obtained at diagnosis (before treatment) and processed within 24 hours after sampling. All samples contained >90% leukemic blasts.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from leukemic cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Fragmented cRNA was hybridized to Affymetrix HU133A microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Gene expression data were normalized using dChip, and filtered with a max-min=100, and max/min=4.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Ronald,,Stam
| | Sample_contact_email | r.stam@erasmusmc.nl
| | Sample_contact_institute | Erasmus MC - Sophia Children's Hospital
| | Sample_contact_address | Dr. Molewaterplein 60
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474644/suppl/GSM474644.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM474nnn/GSM474644/suppl/GSM474644.CHP.gz
| | Sample_series_id | GSE19143
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
