Search results for the GEO ID: GSE19238  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM476767 | GPL570 |
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Sample1
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subcutaneous adipose tissue
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tissue: adbominal subcutaneous adipose tissue, collected via needle biopsy
genome/variation: del 16p11.2
disease status: obese
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gene expression data from subcutaneous adipose tissue from an obese individual
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| Sample_geo_accession | GSM476767
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 01 2009
| | Sample_last_update_date | Dec 01 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Lipid Tissue RNA extraction kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | Gene expression levels were normalised using the Robust Multiarray Average (RMA) method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Johanna,Cecilia,Andersson
| | Sample_contact_email | j.andersson@imperial.ac.uk
| | Sample_contact_laboratory | Froguel
| | Sample_contact_department | Division of Genetics of Common Disease
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Burlington Danes Building, Hammersmith Hospital, Du Cane Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W12 0NN
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM476nnn/GSM476767/suppl/GSM476767.CEL.gz
| | Sample_series_id | GSE19238
| | Sample_data_row_count | 54675
| | |
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GSM476768 | GPL570 |
|
Sample2
|
subcutaneous adipose tissue
|
tissue: adbominal subcutaneous adipose tissue, collected via needle biopsy
genome/variation: del 16p11.2
disease status: obese
|
gene expression data from subcutaneous adipose tissue from an obese individual
|
| Sample_geo_accession | GSM476768
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 01 2009
| | Sample_last_update_date | Dec 01 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Lipid Tissue RNA extraction kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation,15 ug of cRNA were hybridized for 16 hr at 45C on Human U133 Plus 2.0 arrays. Arrays were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | After hybridisation (according to the Minimum Information About a Microarray Experiment guideline, the arrays were scanned using an Affymetrix confocal laser scanner (Affymetrix, GeneArray scanner GCS3000) and visualised using GeneChip Operating Software (GCOS, Affymetrix).
| | Sample_data_processing | Gene expression levels were normalised using the Robust Multiarray Average (RMA) method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Johanna,Cecilia,Andersson
| | Sample_contact_email | j.andersson@imperial.ac.uk
| | Sample_contact_laboratory | Froguel
| | Sample_contact_department | Division of Genetics of Common Disease
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Burlington Danes Building, Hammersmith Hospital, Du Cane Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W12 0NN
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM476nnn/GSM476768/suppl/GSM476768.CEL.gz
| | Sample_series_id | GSE19238
| | Sample_data_row_count | 54675
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