Search results for the GEO ID: GSE19354  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM480592 | GPL1355 |
|
HSC-2 replicate 2, 42nd passage
|
untransfected control
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: untransfected control
cell passage: 42
|
Gene expression data control
|
| Sample_geo_accession | GSM480592
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480592/suppl/GSM480592.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480593 | GPL1355 |
|
HSC-2 replicate 2, 43rd passage
|
untransfected control
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: untransfected control
cell passage: 43
|
Gene expression data control
|
| Sample_geo_accession | GSM480593
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480593/suppl/GSM480593.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480594 | GPL1355 |
|
HSC-2 scrambled control, 42nd passage
|
scr transfected control
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: scr transfected control
cell passage: 42
|
Gene expression data control
|
| Sample_geo_accession | GSM480594
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480594/suppl/GSM480594.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480595 | GPL1355 |
|
HSC-2 scrambled control, 43rd passage
|
scr transfected control
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: scr transfected control
cell passage: 43
|
Gene expression data control
|
| Sample_geo_accession | GSM480595
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480595/suppl/GSM480595.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480596 | GPL1355 |
|
HSC-2 mir-146a OE transfected clone S1, P42
|
rno-miR-146a clone S1 transfected passage 42
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: rno-miR-146a clone S1
cell passage: 42
|
Gene expression data sample
|
| Sample_geo_accession | GSM480596
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480596/suppl/GSM480596.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480597 | GPL1355 |
|
HSC-2 mir-146a OE transfected clone S1, P43
|
rno-miR-146a clone S1 transfected passage 43
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: rno-miR-146a clone S1
cell passage: 43
|
Gene expression data sample
|
| Sample_geo_accession | GSM480597
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480597/suppl/GSM480597.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480598 | GPL1355 |
|
HSC-2 mir-146a OE transfected clone S4, P42
|
rno-miR-146a clone S4 transfected passage 42
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: rno-miR-146a clone S4
cell passage: 42
|
Gene expression data sample
|
| Sample_geo_accession | GSM480598
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480598/suppl/GSM480598.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480599 | GPL1355 |
|
HSC-2 mir-146a OE transfected clone S4, P43
|
rno-miR-146a clone S4 transfected passage 43
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: rno-miR-146a clone S4
cell passage: 43
|
Gene expression data sample
|
| Sample_geo_accession | GSM480599
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480599/suppl/GSM480599.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480600 | GPL1355 |
|
HSC-2 mir-146a OE transfected clone S5, P42
|
rno-miR-146a clone S5 transfected passage 42
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: rno-miR-146a clone S5
cell passage: 42
|
Gene expression data sample
|
| Sample_geo_accession | GSM480600
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480600/suppl/GSM480600.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
|
GSM480601 | GPL1355 |
|
HSC-2 mir-146a OE transfected clone S5, P43
|
rno-miR-146a clone S5 transfected passage 43
|
strain: Wistar
cell type: hepatic stellate cells
cell line: HSC-2
genome/variation: rno-miR-146a clone S5
cell passage: 43
|
Gene expression data sample
|
| Sample_geo_accession | GSM480601
| | Sample_status | Public on Dec 08 2009
| | Sample_submission_date | Dec 07 2009
| | Sample_last_update_date | Dec 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | DMEM (high glucose) + 10%FBS + antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA II kit M&N
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix labeling protocol (one-cycle cDNA synthesis)
| | Sample_hyb_protocol | Affymetrix hybridization protocol
| | Sample_scan_protocol | Genechip scanner 3000
| | Sample_data_processing | The microarray probe set data was summarized using RMA and normalized using the Cross-correlation method using R (Chua et al., 2006).
| | Sample_data_processing |
| | Sample_data_processing | Chua SW, Vijayakumar P, Nissom PM, Yam CY, Wong VV, Yang H: A novel normalization method for effective removal of systematic variation in microarray data. Nucleic acids research 2006, 34(5):e38.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | jinmiao,,chen
| | Sample_contact_institute | Singapore Immunology Network
| | Sample_contact_address | Biopolis
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138648
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480601/suppl/GSM480601.CEL.gz
| | Sample_series_id | GSE19354
| | Sample_series_id | GSE19463
| | Sample_data_row_count | 31099
| | |
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