Result

Search results for the GEO ID: GSE19369

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Title

Source name

Description

Characteristics

GSM480814

GPL1261

DMSO_4 hours_replicate1

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, DMSO, 4h

tissue: bone marrow cell type: dendritic cells treatment: DMSO treatment time: 4 hours

DMSO-4 hours. 579

Sample_geo_accession	GSM480814
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480814/suppl/GSM480814.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

GSM480815

GPL1261

DMSO_4 hours_replicate2

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, DMSO, 4h

tissue: bone marrow cell type: dendritic cells treatment: DMSO treatment time: 4 hours

DMSO-4 hours. 580

Sample_geo_accession	GSM480815
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480815/suppl/GSM480815.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

GSM480816

GPL1261

BF/S+L/Ep_4 hours_replicate1

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, BF/S+L/Ep, 4h

tissue: bone marrow cell type: dendritic cells treatment: BF/S+L/Ep treatment time: 4 hours

BF/S+L/Ep-4 hours. 581

Sample_geo_accession	GSM480816
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480816/suppl/GSM480816.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

GSM480817

GPL1261

BF/S+L/Ep_4 hours_replicate2

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, BF/S+L/Ep, 4h

tissue: bone marrow cell type: dendritic cells treatment: BF/S+L/Ep treatment time: 4 hours

BF/S+L/Ep-4 hours. 582

Sample_geo_accession	GSM480817
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480817/suppl/GSM480817.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

GSM480818

GPL1261

DMSO_ 12 hours_replicate1

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, DMSO, 12h

tissue: bone marrow cell type: dendritic cells treatment: DMSO treatment time: 12 hours

DMSO-12 hours. 583

Sample_geo_accession	GSM480818
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480818/suppl/GSM480818.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

GSM480819

GPL1261

DMSO_ 12 hours_replicate2

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, DMSO, 12h

tissue: bone marrow cell type: dendritic cells treatment: DMSO treatment time: 12 hours

DMSO-12 hours. 584

Sample_geo_accession	GSM480819
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480819/suppl/GSM480819.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

GSM480820

GPL1261

BF/S+L/Ep_12 hours_replicate1

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, BF/S+L/Ep, 12h

tissue: bone marrow cell type: dendritic cells treatment: BF/S+L/Ep treatment time: 12 hours

BF/S+L/Ep-12 hours. 585

Sample_geo_accession	GSM480820
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480820/suppl/GSM480820.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

GSM480821

GPL1261

BF/S+L/Ep_12 hours_replicate2

immature dendritic cells (BMDC) isolated from cultured mouse bone marrow, BF/S+L/Ep, 12h

tissue: bone marrow cell type: dendritic cells treatment: BF/S+L/Ep treatment time: 12 hours

BF/S+L/Ep-12 hours. 586

Sample_geo_accession	GSM480821
Sample_status	Public on Sep 13 2010
Sample_submission_date	Dec 07 2009
Sample_last_update_date	Sep 13 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	BMDC culture was treated with DMSO (0.1%) or [BF/S+L/Ep], a chemically defined Echinacea purpurea extract, at a final concentration of 75 µg/mL using DMSO as vehicle for 4 hours or 12 hours.
Sample_growth_protocol_ch1	Mouse bone marrow cells were isolated and cultured for 9 days in RPMI-1640 medium supplemented with 200 U/mL GM-CSF.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10ug total RNA.
Sample_hyb_protocol	Following fragmentation, 10ug of cRNA were hybridized for 16 hr on GeneChip Mouse Genome 430_2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 30007G.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Sample_platform_id	GPL1261
Sample_contact_name	Ning-Sun,,Yang
Sample_contact_email	nsyang@gate.sinica.edu.tw
Sample_contact_phone	886-2-2785-1086 ext. 101
Sample_contact_fax	886-2-2651-5600
Sample_contact_laboratory	Ning-Sun Yang
Sample_contact_department	Agricultural Biotechnology Research Center
Sample_contact_institute	Academia Sinica
Sample_contact_address	No.128 Sec.2, Academia Rd.
Sample_contact_city	Taipei
Sample_contact_state	Taiwan
Sample_contact_zip/postal_code	115
Sample_contact_country	Taiwan
Sample_contact_web_link	http://abrc.sinica.edu.tw/
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480821/suppl/GSM480821.CEL.gz
Sample_series_id	GSE19369
Sample_data_row_count	45101

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