Search results for the GEO ID: GSE19383 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM480984 | GPL570 |
|
Breast-BRCA1-1
|
Breast BRCA1 'one-hit' mutant cells from subject 1
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA1 mutant
|
Sample_geo_accession | GSM480984
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480984/suppl/GSM480984.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480985 | GPL570 |
|
Breast-BRCA1-2
|
Breast BRCA1 'one-hit' mutant cells from subject 2
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA1 mutant
|
Sample_geo_accession | GSM480985
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480985/suppl/GSM480985.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480986 | GPL570 |
|
Breast-BRCA1-3
|
Breast BRCA1 'one-hit' mutant cells from subject 3
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA1 mutant
|
Sample_geo_accession | GSM480986
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480986/suppl/GSM480986.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480987 | GPL570 |
|
Breast-BRCA1-4
|
Breast BRCA1 'one-hit' mutant cells from subject 4
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA1 mutant
|
Sample_geo_accession | GSM480987
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480987/suppl/GSM480987.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480988 | GPL570 |
|
Breast-BRCA1-5
|
Breast BRCA1 'one-hit' mutant cells from subject 5
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA1 mutant
|
Sample_geo_accession | GSM480988
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480988/suppl/GSM480988.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480989 | GPL570 |
|
Breast-BRCA1-6
|
Breast BRCA1 'one-hit' mutant cells from subject 6
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA1 mutant
|
Sample_geo_accession | GSM480989
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480989/suppl/GSM480989.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480990 | GPL570 |
|
Breast-WT-1
|
Breast wild type cells from subject 1
|
cell type: Epithelial cell culture
|
RNA from Breast WT
|
Sample_geo_accession | GSM480990
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480990/suppl/GSM480990.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480991 | GPL570 |
|
Breast-WT-2
|
Breast wild type cells from subject 2
|
cell type: Epithelial cell culture
|
RNA from Breast WT
|
Sample_geo_accession | GSM480991
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480991/suppl/GSM480991.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480992 | GPL570 |
|
Breast-WT-3
|
Breast wild type cells from subject 3
|
cell type: Epithelial cell culture
|
RNA from Breast WT
|
Sample_geo_accession | GSM480992
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480992/suppl/GSM480992.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480993 | GPL570 |
|
Breast-WT-4
|
Breast wild type cells from subject 4
|
cell type: Epithelial cell culture
|
RNA from Breast WT
|
Sample_geo_accession | GSM480993
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480993/suppl/GSM480993.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480994 | GPL570 |
|
Breast-WT-5
|
Breast wild type cells from subject 5
|
cell type: Epithelial cell culture
|
RNA from Breast WT
|
Sample_geo_accession | GSM480994
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480994/suppl/GSM480994.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480995 | GPL570 |
|
Breast-WT-6
|
Breast wild type cells from subject 6
|
cell type: Epithelial cell culture
|
RNA from Breast WT
|
Sample_geo_accession | GSM480995
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480995/suppl/GSM480995.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480996 | GPL570 |
|
Breast-BRCA2-1
|
Breast BRCA2 'one-hit' mutant cells from subject 1
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA2 mutant
|
Sample_geo_accession | GSM480996
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480996/suppl/GSM480996.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480997 | GPL570 |
|
Breast-BRCA2-2
|
Breast BRCA2 'one-hit' mutant cells from subject 2
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA2 mutant
|
Sample_geo_accession | GSM480997
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480997/suppl/GSM480997.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480998 | GPL570 |
|
Breast-BRCA2-3
|
Breast BRCA2 'one-hit' mutant cells from subject 3
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA2 mutant
|
Sample_geo_accession | GSM480998
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480998/suppl/GSM480998.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM480999 | GPL570 |
|
Breast-BRCA2-4
|
Breast BRCA2 'one-hit' mutant cells from subject 4
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA2 mutant
|
Sample_geo_accession | GSM480999
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM480nnn/GSM480999/suppl/GSM480999.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481000 | GPL570 |
|
Breast-BRCA2-5
|
Breast BRCA2 'one-hit' mutant cells from subject 5
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA2 mutant
|
Sample_geo_accession | GSM481000
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481000/suppl/GSM481000.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481001 | GPL570 |
|
Breast-BRCA2-6
|
Breast BRCA2 'one-hit' mutant cells from subject 6
|
cell type: Epithelial cell culture
|
RNA from Breast BRCA2 mutant
|
Sample_geo_accession | GSM481001
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481001/suppl/GSM481001.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481002 | GPL570 |
|
Ovary-BRCA1-1
|
Ovary BRCA1 'one-hit' mutant cells from subject 1
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA1 mutant
|
Sample_geo_accession | GSM481002
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481002/suppl/GSM481002.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481003 | GPL570 |
|
Ovary-BRCA1-2
|
Ovary BRCA1 'one-hit' mutant cells from subject 2
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA1 mutant
|
Sample_geo_accession | GSM481003
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481003/suppl/GSM481003.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481004 | GPL570 |
|
Ovary-BRCA1-3
|
Ovary BRCA1 'one-hit' mutant cells from subject 3
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA1 mutant
|
Sample_geo_accession | GSM481004
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481004/suppl/GSM481004.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481005 | GPL570 |
|
Ovary-BRCA1-4
|
Ovary BRCA1 'one-hit' mutant cells from subject 4
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA1 mutant
|
Sample_geo_accession | GSM481005
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481005/suppl/GSM481005.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481006 | GPL570 |
|
Ovary-BRCA1-5
|
Ovary BRCA1 'one-hit' mutant cells from subject 5
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA1 mutant
|
Sample_geo_accession | GSM481006
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481006/suppl/GSM481006.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481007 | GPL570 |
|
Ovary-BRCA1-6
|
Ovary BRCA1 'one-hit' mutant cells from subject 6
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA1 mutant
|
Sample_geo_accession | GSM481007
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481007/suppl/GSM481007.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481008 | GPL570 |
|
Ovary-WT-1
|
Ovary wild type cells from subject 1
|
cell type: Epithelial cell culture
|
RNA from Ovary WT
|
Sample_geo_accession | GSM481008
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481008/suppl/GSM481008.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481009 | GPL570 |
|
Ovary-WT-2
|
Ovary wild type cells from subject 2
|
cell type: Epithelial cell culture
|
RNA from Ovary WT
|
Sample_geo_accession | GSM481009
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481009/suppl/GSM481009.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481010 | GPL570 |
|
Ovary-WT-3
|
Ovary wild type cells from subject 3
|
cell type: Epithelial cell culture
|
RNA from Ovary WT
|
Sample_geo_accession | GSM481010
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481010/suppl/GSM481010.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481011 | GPL570 |
|
Ovary-WT-4
|
Ovary wild type cells from subject 4
|
cell type: Epithelial cell culture
|
RNA from Ovary WT
|
Sample_geo_accession | GSM481011
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481011/suppl/GSM481011.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481012 | GPL570 |
|
Ovary-WT-5
|
Ovary wild type cells from subject 5
|
cell type: Epithelial cell culture
|
RNA from Ovary WT
|
Sample_geo_accession | GSM481012
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481012/suppl/GSM481012.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481013 | GPL570 |
|
Ovary-WT-6
|
Ovary wild type cells from subject 6
|
cell type: Epithelial cell culture
|
RNA from Ovary WT
|
Sample_geo_accession | GSM481013
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481013/suppl/GSM481013.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481014 | GPL570 |
|
Ovary-BRCA2-1
|
Ovary BRCA2 'one-hit' mutant cells from subject 1
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA2 mutant
|
Sample_geo_accession | GSM481014
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481014/suppl/GSM481014.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481015 | GPL570 |
|
Ovary-BRCA2-2
|
Ovary BRCA2 'one-hit' mutant cells from subject 2
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA2 mutant
|
Sample_geo_accession | GSM481015
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481015/suppl/GSM481015.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481016 | GPL570 |
|
Ovary-BRCA2-3
|
Ovary BRCA2 'one-hit' mutant cells from subject 3
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA2 mutant
|
Sample_geo_accession | GSM481016
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481016/suppl/GSM481016.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481017 | GPL570 |
|
Ovary-BRCA2-4
|
Ovary BRCA2 'one-hit' mutant cells from subject 4
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA2 mutant
|
Sample_geo_accession | GSM481017
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481017/suppl/GSM481017.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481018 | GPL570 |
|
Ovary-BRCA2-5
|
Ovary BRCA2 'one-hit' mutant cells from subject 5
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA2 mutant
|
Sample_geo_accession | GSM481018
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481018/suppl/GSM481018.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
GSM481019 | GPL570 |
|
Ovary-BRCA2-6
|
Ovary BRCA2 'one-hit' mutant cells from subject 6
|
cell type: Epithelial cell culture
|
RNA from Ovary BRCA2 mutant
|
Sample_geo_accession | GSM481019
| Sample_status | Public on Mar 01 2010
| Sample_submission_date | Dec 08 2009
| Sample_last_update_date | Dec 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was prepared from cultured cells by extraction in guanidinium isothiocyanate-based buffer containing -mercaptoethanol and acid phenol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated
| Sample_hyb_protocol | each sample a total of 2.2 ug of ssDNA, labeled and fragmented with the NuGEN kit, was hybridized to Affymetrix arrays
| Sample_scan_protocol | arrays were scanned with the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | CEL fles were normalized using RMA and bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | suraj,,peri
| Sample_contact_email | suraj.peri@fccc.edu
| Sample_contact_department | biostatistics and bioinformatics
| Sample_contact_institute | Fox chase cancer center
| Sample_contact_address | 333 cottman ave
| Sample_contact_city | philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19111
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM481nnn/GSM481019/suppl/GSM481019.CEL.gz
| Sample_series_id | GSE19383
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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