Search results for the GEO ID: GSE19404  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM482075 | GPL570 |
|
CNS PNET 01
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482075
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482075/suppl/GSM482075.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482076 | GPL570 |
|
CNS PNET 02R
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482076
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482076/suppl/GSM482076.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482077 | GPL570 |
|
CNS PNET 03R
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482077
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482077/suppl/GSM482077.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482078 | GPL570 |
|
CNS PNET 04
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482078
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482078/suppl/GSM482078.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482079 | GPL570 |
|
CNS PNET 05
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482079
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482079/suppl/GSM482079.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482080 | GPL570 |
|
CNS PNET 05R
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482080
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482080/suppl/GSM482080.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482081 | GPL570 |
|
CNS PNET 06
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482081
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482081/suppl/GSM482081.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482082 | GPL570 |
|
CNS PNET 06R
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482082
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482082/suppl/GSM482082.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482083 | GPL570 |
|
CNS PNET 07
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482083
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482083/suppl/GSM482083.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482084 | GPL570 |
|
CNS PNET 07R
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482084
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482084/suppl/GSM482084.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482085 | GPL570 |
|
CNS PNET 08
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482085
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482085/suppl/GSM482085.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482086 | GPL570 |
|
CNS PNET 09
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482086
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482086/suppl/GSM482086.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482087 | GPL570 |
|
CNS PNET 10
|
Tumor material, snap frozen during surgery
|
tumour type: CNS PNET
|
no additional information
|
| Sample_geo_accession | GSM482087
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482087/suppl/GSM482087.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482088 | GPL570 |
|
PB 01
|
Tumor material, snap frozen during surgery
|
tumour type: Pineoblastoma
|
no additional information
|
| Sample_geo_accession | GSM482088
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482088/suppl/GSM482088.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482089 | GPL570 |
|
ATRT 01
|
Tumor material, snap frozen during surgery
|
tumour type: atypical teratoid/rhabdoid tumour (ATRT)
|
no additional information
|
| Sample_geo_accession | GSM482089
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482089/suppl/GSM482089.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482090 | GPL570 |
|
MB 01
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482090
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482090/suppl/GSM482090.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482091 | GPL570 |
|
MB 02
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482091
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482091/suppl/GSM482091.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482092 | GPL570 |
|
MB 03R
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482092
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482092/suppl/GSM482092.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482093 | GPL570 |
|
MB 04
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482093
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482093/suppl/GSM482093.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482094 | GPL570 |
|
MB 05
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482094
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482094/suppl/GSM482094.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482095 | GPL570 |
|
MB 06
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482095
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482095/suppl/GSM482095.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482096 | GPL570 |
|
MB 07
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482096
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482096/suppl/GSM482096.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482097 | GPL570 |
|
MB 08
|
Tumor material, snap frozen during surgery
|
tumour type: Medulloblastoma
|
no additional information
|
| Sample_geo_accession | GSM482097
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482097/suppl/GSM482097.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
| | |
|
GSM482098 | GPL570 |
|
Fetal Brain
|
Commercial fetal brain RNA sample (Clontech)
|
tumour type: Normal fetal brain
|
no additional information
|
| Sample_geo_accession | GSM482098
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Dec 09 2009
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Tumor material was removed during surgery then snap frozen
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using the mirVana miRNA isolation kit (Ambion)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from 5 mg RNA using the Affymetrix HT IVT labeling method (one cycle)
| | Sample_hyb_protocol | Labeled RNA was hybridized for 16 hours at 45 oC on the U133 plus 2 array. GeneChips were washed and stained in the fluidics station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip scanner 8000 with autoloader
| | Sample_data_processing | Raw data was analysed using Expression console. RMA was used to generate data for analysis. Processed data was analysed in Spotfire DecisionSite for Functional Genomics (TIBCO Software Inc.) for hierarchical clustering and priniciple component analysis. BRB Array Tools Software ver 3.7 (http://linus.nci.nih.gov/BRB-ArrayTools.html) was used for t-tests.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hazel,Anne,Rogers
| | Sample_contact_email | hazel.rogers@nottingham.ac.uk
| | Sample_contact_laboratory | D18
| | Sample_contact_department | Clinical Sciences
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Medical School
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM482nnn/GSM482098/suppl/GSM482098.CEL.gz
| | Sample_series_id | GSE19404
| | Sample_data_row_count | 54675
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