Search results for the GEO ID: GSE19513  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM506899 | GPL1261 |
|
wildtype P2 hippocampus rep1
|
P2 control hippocampus
|
tissue: Hippocampus
genotype: wildtype
age: P2
|
Gene expression data from P2 hippocampus.
|
| Sample_geo_accession | GSM506899
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Feb 05 2010
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After anesthesia on ice, hippocampi were manually dissected under the dissecting scope and snap-frozen in liquid nitrogen before storage at -80C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray TM Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Weiping,J,Zhang
| | Sample_contact_department | Pathophysiology
| | Sample_contact_institute | Second Military Medical University
| | Sample_contact_address | 800 Xiangyin Road
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200433
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506899/suppl/GSM506899.CEL.gz
| | Sample_series_id | GSE19513
| | Sample_data_row_count | 45037
| | |
|
GSM506900 | GPL1261 |
|
wildtype P2 hippocampus rep2
|
P2 control hippocampus
|
tissue: Hippocampus
genotype: wildtype
age: P2
|
Gene expression data from P2 hippocampus.
|
| Sample_geo_accession | GSM506900
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Feb 05 2010
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After anesthesia on ice, hippocampi were manually dissected under the dissecting scope and snap-frozen in liquid nitrogen before storage at -80C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray TM Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Weiping,J,Zhang
| | Sample_contact_department | Pathophysiology
| | Sample_contact_institute | Second Military Medical University
| | Sample_contact_address | 800 Xiangyin Road
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200433
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506900/suppl/GSM506900.CEL.gz
| | Sample_series_id | GSE19513
| | Sample_data_row_count | 45037
| | |
|
GSM506901 | GPL1261 |
|
ZBTB20-KO P2 hippocampus rep1
|
P2 knockout hippocampus
|
tissue: Hippocampus
genotype: ZBTB20 knockout
age: P2
|
Gene expression data from P2 hippocampus.
|
| Sample_geo_accession | GSM506901
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Feb 05 2010
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After anesthesia on ice, hippocampi were manually dissected under the dissecting scope and snap-frozen in liquid nitrogen before storage at -80C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray TM Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Weiping,J,Zhang
| | Sample_contact_department | Pathophysiology
| | Sample_contact_institute | Second Military Medical University
| | Sample_contact_address | 800 Xiangyin Road
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200433
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506901/suppl/GSM506901.CEL.gz
| | Sample_series_id | GSE19513
| | Sample_data_row_count | 45037
| | |
|
GSM506902 | GPL1261 |
|
ZBTB20-KO P2 hippocampus rep2
|
P2 knockout hippocampus
|
tissue: Hippocampus
genotype: ZBTB20 knockout
age: P2
|
Gene expression data from P2 hippocampus.
|
| Sample_geo_accession | GSM506902
| | Sample_status | Public on Mar 08 2010
| | Sample_submission_date | Feb 05 2010
| | Sample_last_update_date | Mar 08 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After anesthesia on ice, hippocampi were manually dissected under the dissecting scope and snap-frozen in liquid nitrogen before storage at -80C.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray TM Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Weiping,J,Zhang
| | Sample_contact_department | Pathophysiology
| | Sample_contact_institute | Second Military Medical University
| | Sample_contact_address | 800 Xiangyin Road
| | Sample_contact_city | Shanghai
| | Sample_contact_zip/postal_code | 200433
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM506nnn/GSM506902/suppl/GSM506902.CEL.gz
| | Sample_series_id | GSE19513
| | Sample_data_row_count | 45037
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
