Search results for the GEO ID: GSE19524  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM486953 | GPL85 |
|
shr_ctrl_1
|
Rat mesentaric arteries
|
vessel type: control
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486953
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486953/suppl/GSM486953.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486953/suppl/GSM486953.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486954 | GPL85 |
|
shr_collat_1
|
Rat mesentaric arteries
|
vessel type: collateral
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486954
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486954/suppl/GSM486954.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486954/suppl/GSM486954.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486955 | GPL85 |
|
shr_ctrl_2
|
Rat mesentaric arteries
|
vessel type: control
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486955
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486955/suppl/GSM486955.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486955/suppl/GSM486955.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486956 | GPL85 |
|
shr_collat_2
|
Rat mesentaric arteries
|
vessel type: collateral
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486956
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486956/suppl/GSM486956.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486956/suppl/GSM486956.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486957 | GPL85 |
|
shr_ctrl_3
|
Rat mesentaric arteries
|
vessel type: control
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486957
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486957/suppl/GSM486957.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486957/suppl/GSM486957.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486958 | GPL85 |
|
shr_collat_3
|
Rat mesentaric arteries
|
vessel type: collateral
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486958
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486958/suppl/GSM486958.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486958/suppl/GSM486958.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486959 | GPL85 |
|
shr_ctrl_4
|
Rat mesentaric arteries
|
vessel type: control
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486959
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486959/suppl/GSM486959.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486959/suppl/GSM486959.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486960 | GPL85 |
|
shr_collat_4
|
Rat mesentaric arteries
|
vessel type: collateral
strain: shr
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486960
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486960/suppl/GSM486960.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486960/suppl/GSM486960.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486961 | GPL85 |
|
wky_ctrl_1
|
Rat mesentaric arteries
|
vessel type: control
strain: wky
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486961
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486961/suppl/GSM486961.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486961/suppl/GSM486961.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486962 | GPL85 |
|
wky_collat_1
|
Rat mesentaric arteries
|
vessel type: collateral
strain: wky
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486962
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486962/suppl/GSM486962.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486962/suppl/GSM486962.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486963 | GPL85 |
|
wky_ctrl_2
|
Rat mesentaric arteries
|
vessel type: control
strain: wky
|
Gene expression data from rat
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| Sample_geo_accession | GSM486963
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486963/suppl/GSM486963.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486963/suppl/GSM486963.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
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GSM486964 | GPL85 |
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wky_collat_2
|
Rat mesentaric arteries
|
vessel type: collateral
strain: wky
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486964
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486964/suppl/GSM486964.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486964/suppl/GSM486964.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486965 | GPL85 |
|
wky_ctrl_3
|
Rat mesentaric arteries
|
vessel type: control
strain: wky
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486965
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486965/suppl/GSM486965.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486965/suppl/GSM486965.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486966 | GPL85 |
|
wky_collat_3
|
Rat mesentaric arteries
|
vessel type: collateral
strain: wky
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486966
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486966/suppl/GSM486966.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486966/suppl/GSM486966.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
| | |
|
GSM486967 | GPL85 |
|
wky_collat_4
|
Rat mesentaric arteries
|
vessel type: collateral
strain: wky
|
Gene expression data from rat
|
| Sample_geo_accession | GSM486967
| | Sample_status | Public on Dec 15 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Collateral artery model created by adjacent arterial occlusion, see Unthank JL, Fath SW, et al. (1996). "Wall remodeling during luminal expansion of mesenteric arterial collaterals in the rat." Circulation Research 79: 1015.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA was purified by using an RNeasy Fibrous Tissue Mini Kit (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from <1ug of total RNA, see McClintick, J. N., R. E. Jerome, et al. (2003). "Reproducibility of oligonucleotide arrays using small samples." BMC Genomics 4(1): 4.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on RG*34A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Joseph,,Unthank
| | Sample_contact_email | junthank@iupui.edu
| | Sample_contact_phone | 317-274-7339
| | Sample_contact_fax | 317-274-7334
| | Sample_contact_institute | Indiana University
| | Sample_contact_address | 1001 West Tenth St
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486967/suppl/GSM486967.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486967/suppl/GSM486967.CHP.gz
| | Sample_series_id | GSE19524
| | Sample_data_row_count | 8799
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