Search results for the GEO ID: GSE19528  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM486995 | GPL1261 |
|
Control biological rep1
|
Mybf/f Cd4-Cre Tcra-/- DP, biological rep1
|
genotype/variation: c-Myb sufficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM486995
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486995/suppl/GSM486995.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
| | |
|
GSM486996 | GPL1261 |
|
Control biological rep2
|
Mybf/f Cd4-Cre Tcra-/- DP, biological rep2
|
genotype/variation: c-Myb sufficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM486996
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486996/suppl/GSM486996.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
| | |
|
GSM486997 | GPL1261 |
|
Control biological rep3
|
Mybf/f Cd4-Cre Tcra-/- DP, biological rep3
|
genotype/variation: c-Myb sufficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM486997
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486997/suppl/GSM486997.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
| | |
|
GSM486998 | GPL1261 |
|
Control biological rep4
|
Mybf/f Cd4-Cre Tcra-/- DP, biological rep4
|
genotype/variation: c-Myb sufficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM486998
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486998/suppl/GSM486998.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
| | |
|
GSM486999 | GPL1261 |
|
Mutant biological rep1
|
Mybf/w Cd4-Cre Tcra-/- DP, biological rep1
|
genotype/variation: c-Myb deficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM486999
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM486nnn/GSM486999/suppl/GSM486999.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
| | |
|
GSM487000 | GPL1261 |
|
Mutant biological rep2
|
Mybf/w Cd4-Cre Tcra-/- DP, biological rep2
|
genotype/variation: c-Myb deficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM487000
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487000/suppl/GSM487000.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
| | |
|
GSM487001 | GPL1261 |
|
Mutant biological rep3
|
Mybf/w Cd4-Cre Tcra-/- DP, biological rep3
|
genotype/variation: c-Myb deficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM487001
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487001/suppl/GSM487001.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
| | |
|
GSM487002 | GPL1261 |
|
Mutant biological rep4
|
Mybf/w Cd4-Cre Tcra-/- DP, biological rep4
|
genotype/variation: c-Myb deficient
age: 4-5weeks
|
Gene expression data from DP thymocytes.
|
| Sample_geo_accession | GSM487002
| | Sample_status | Public on Jan 22 2010
| | Sample_submission_date | Dec 17 2009
| | Sample_last_update_date | Dec 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tcra-/- thymocytes were freshly harvested and positively selected for the DP subset over anti-CD4 magnetic columns (Miltenyi).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 2-10 ug of total RNA was extracted using the Rneasy Kit (Qiagen). Total RNA integrity was assessed by analysis with an Agilent Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared per standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed for 16 hrs per standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix GeneArray Scanner
| | Sample_data_processing | GeneChIP Operating Software (GCOS)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,P,Bender
| | Sample_contact_email | tpb3e@virginia.edu
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 345 Crispell Dr
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487002/suppl/GSM487002.CEL.gz
| | Sample_series_id | GSE19528
| | Sample_data_row_count | 45101
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