Search results for the GEO ID: GSE19577  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM487932 | GPL570 |
|
Sample 1 -MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487932
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487932/suppl/GSM487932.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487933 | GPL570 |
|
Sample 2 - MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487933
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487933/suppl/GSM487933.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487934 | GPL570 |
|
Sample 3 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487934
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487934/suppl/GSM487934.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487935 | GPL570 |
|
Sample 4 - MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487935
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487935/suppl/GSM487935.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487936 | GPL570 |
|
Sample 5 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487936
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487936/suppl/GSM487936.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487937 | GPL570 |
|
Sample 6 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487937
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487937/suppl/GSM487937.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487938 | GPL570 |
|
Sample 7 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487938
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487938/suppl/GSM487938.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487939 | GPL570 |
|
Sample 8 - MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487939
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487939/suppl/GSM487939.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487940 | GPL570 |
|
Sample 9 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487940
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487940/suppl/GSM487940.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487941 | GPL570 |
|
Sample 10 - MLL/ENL
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/ENL translocations at diagnosis
|
| Sample_geo_accession | GSM487941
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487941/suppl/GSM487941.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487942 | GPL570 |
|
Sample 11 - MLL/SEPTIN6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/SEPTIN6 translocations at diagnosis
|
| Sample_geo_accession | GSM487942
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487942/suppl/GSM487942.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487943 | GPL570 |
|
Sample 12 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487943
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487943/suppl/GSM487943.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487944 | GPL570 |
|
Sample 13 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487944
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487944/suppl/GSM487944.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487945 | GPL570 |
|
Sample 14 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487945
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487945/suppl/GSM487945.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487946 | GPL570 |
|
Sample 15 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487946
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487946/suppl/GSM487946.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487947 | GPL570 |
|
Sample 16 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487947
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487947/suppl/GSM487947.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487948 | GPL570 |
|
Sample 17 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487948
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487948/suppl/GSM487948.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487949 | GPL570 |
|
Sample 18 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487949
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487949/suppl/GSM487949.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487950 | GPL570 |
|
Sample 19 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487950
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487950/suppl/GSM487950.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487951 | GPL570 |
|
Sample 20 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487951
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487951/suppl/GSM487951.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487952 | GPL570 |
|
Sample 21 - MLL/AF6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF6 translocations at diagnosis
|
| Sample_geo_accession | GSM487952
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487952/suppl/GSM487952.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487953 | GPL570 |
|
Sample 22 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487953
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487953/suppl/GSM487953.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487954 | GPL570 |
|
Sample 23 - MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487954
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487954/suppl/GSM487954.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487955 | GPL570 |
|
Sample 24 - MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487955
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487955/suppl/GSM487955.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487956 | GPL570 |
|
Sample 25 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487956
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487956/suppl/GSM487956.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487957 | GPL570 |
|
Sample 26 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487957
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487957/suppl/GSM487957.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487958 | GPL570 |
|
Sample 27 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487958
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487958/suppl/GSM487958.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487959 | GPL570 |
|
Sample 28 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487959
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487959/suppl/GSM487959.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487960 | GPL570 |
|
Sample 29 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487960
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487960/suppl/GSM487960.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487961 | GPL570 |
|
Sample 30 - MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487961
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487961/suppl/GSM487961.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487962 | GPL570 |
|
Sample 31 - MLL/AF10
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487962
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487962/suppl/GSM487962.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487963 | GPL570 |
|
Sample 32 - MLL/AF1q
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF1q translocations at diagnosis
|
| Sample_geo_accession | GSM487963
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487963/suppl/GSM487963.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487964 | GPL570 |
|
Sample 33 - MLL/ENL
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/ENL translocations at diagnosis
|
| Sample_geo_accession | GSM487964
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487964/suppl/GSM487964.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487965 | GPL570 |
|
Sample 34 - MLL/ELL
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/ELL translocations at diagnosis
|
| Sample_geo_accession | GSM487965
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487965/suppl/GSM487965.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487966 | GPL570 |
|
Sample 35 - MLL/SEPTIN6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/SEPTIN6 translocations at diagnosis
|
| Sample_geo_accession | GSM487966
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487966/suppl/GSM487966.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487967 | GPL570 |
|
Sample 36 - MLL/SEPTIN6
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/SEPTIN6 translocations at diagnosis
|
| Sample_geo_accession | GSM487967
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487967/suppl/GSM487967.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487968 | GPL570 |
|
Sample 37 - MLL/AF1q
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF1q translocations at diagnosis
|
| Sample_geo_accession | GSM487968
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487968/suppl/GSM487968.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487969 | GPL570 |
|
Sample 38 - MLL/AF9
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
|
| Sample_geo_accession | GSM487969
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487969/suppl/GSM487969.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487970 | GPL570 |
|
Sample 39 - MLL/AF10
|
Peripheral Blood cells
|
disease state: AML samples
cells: Peripheral Blood
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487970
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487970/suppl/GSM487970.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487971 | GPL570 |
|
Sample 40 - MLL/AF10
|
Peripheral Blood cells
|
disease state: AML samples
cells: Peripheral Blood
|
Gene expression data from acute myeloid leukemia with MLL/AF10 translocations at diagnosis
|
| Sample_geo_accession | GSM487971
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487971/suppl/GSM487971.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487972 | GPL570 |
|
Sample 41 - MLL/ENL
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/ENL translocations at diagnosis
|
| Sample_geo_accession | GSM487972
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487972/suppl/GSM487972.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
GSM487973 | GPL570 |
|
Sample 42 - MLL/ELL
|
Bone Marrow cells
|
disease state: AML samples
cells: Bone Marrow
|
Gene expression data from acute myeloid leukemia with MLL/ELL translocations at diagnosis
|
| Sample_geo_accession | GSM487973
| | Sample_status | Public on Apr 21 2011
| | Sample_submission_date | Dec 18 2009
| | Sample_last_update_date | Apr 21 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000 7G
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM487nnn/GSM487973/suppl/GSM487973.CEL.gz
| | Sample_series_id | GSE19577
| | Sample_data_row_count | 54675
| | |
|
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